Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4g20
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0584 - 18714461-18716296 29 4.2
06_01_0117 + 912780-912959,913754-913828,914059-914112,914848-91... 29 4.2
01_06_0948 - 33242219-33242530,33242632-33242782,33242874-332431... 29 4.2
02_02_0199 - 7710487-7710804,7710907-7711298,7711543-7711878,771... 28 5.5
06_01_0743 - 5534743-5534985,5535075-5535172,5535286-5535429,553... 28 7.3
04_03_0756 + 19314669-19315085 28 7.3
12_01_0120 + 912312-912615,913145-913371,913507-913754,914293-91... 27 9.7
11_01_0673 - 5491694-5493102,5493386-5493995 27 9.7
07_01_0768 - 5905493-5905740,5905953-5906037 27 9.7
>09_04_0584 - 18714461-18716296
Length = 611
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +3
Query: 168 PSKDPEWYIALGMARGQL 221
PS + +W+IALG+ RGQ+
Sbjct: 209 PSGNEDWWIALGLPRGQI 226
>06_01_0117 +
912780-912959,913754-913828,914059-914112,914848-914913,
915137-915241,915454-915570,915827-915927,916012-916058,
916664-916735,916828-916983,917139-917368,917472-917511,
917603-917736,917830-917931,918726-918770,919129-919206,
919225-919365,919447-919542,919732-919833,920185-920283
Length = 679
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 3 VEYKMQVKYIALLTIFTCSQAIYPYFDTQDFIYNVPKV 116
V Y +Y +LL + C + YF D I+ VP++
Sbjct: 305 VNYFSSFQYYSLLQMLNCVAGLREYFSQTDDIHPVPRI 342
>01_06_0948 -
33242219-33242530,33242632-33242782,33242874-33243111,
33243196-33243298,33243323-33243406,33243640-33243815,
33243943-33244074,33248406-33248967,33249084-33249842
Length = 838
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 631 SPEPWIICDEHSGVISQTPSDC 566
SPE W + D +G + TP DC
Sbjct: 327 SPEAWALRDGRAGCVRSTPLDC 348
>02_02_0199 -
7710487-7710804,7710907-7711298,7711543-7711878,
7711971-7711996,7712466-7712525,7712625-7712696,
7712784-7712927,7714165-7714236,7714350-7714482,
7714572-7714680
Length = 553
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 132 VLDKLLDYYERKPSKD--PEWYIALGMARGQL 221
V D+L DY+ KPS D IA+G ARG L
Sbjct: 312 VADRLRDYHHGKPSLDWSKRMRIAVGAARGLL 343
>06_01_0743 -
5534743-5534985,5535075-5535172,5535286-5535429,
5535594-5535643,5535733-5535787,5536595-5536686,
5536758-5536806,5536883-5537079,5537160-5537302,
5537625-5537777,5537848-5537896,5537974-5538071,
5538172-5538327,5538434-5538791,5538873-5538943,
5539134-5539217,5539307-5539468,5539534-5539677,
5539769-5540004,5540990-5541374
Length = 988
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 255 PEKLKENLKNITRRIDRVRKKIDMGNLVYRSKDYEYVVKAIFENMD 392
PE + L+ I +IDR D N + SKD VV+ + MD
Sbjct: 590 PEVVLVKLREIKSKIDRRTSAKDRSNNMISSKDVVRVVEGACKGMD 635
>04_03_0756 + 19314669-19315085
Length = 138
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 404 TRQYIHVFKNCFHYIFVIL 348
TR VF NCFHY F+ +
Sbjct: 111 TRTTFGVFYNCFHYFFIAI 129
>12_01_0120 +
912312-912615,913145-913371,913507-913754,914293-914656,
914758-915154,915671-915693,916645-916987,917513-917532,
918418-918527,919484-920255
Length = 935
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/74 (25%), Positives = 33/74 (44%)
Frame = +3
Query: 255 PEKLKENLKNITRRIDRVRKKIDMGNLVYRSKDYEYVVKAIFENMDVLSSVLEPITLGTM 434
P KL+E+ + RID I + L +D +++K ++ + L++ E I T
Sbjct: 585 PSKLEEHDQKSATRIDEAANAIQLYELFTIVEDENFIIK--YQKFEQLNNTQEKINDRTN 642
Query: 435 GTQKPYRFTFEQYL 476
Q+ R F L
Sbjct: 643 VRQQGTRIRFAPLL 656
>11_01_0673 - 5491694-5493102,5493386-5493995
Length = 672
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 631 SPEPWIICDEHSGVISQTPSDC 566
SP+ W + D +G I TP DC
Sbjct: 270 SPQDWKLKDRSAGCIRNTPLDC 291
>07_01_0768 - 5905493-5905740,5905953-5906037
Length = 110
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -3
Query: 634 ASPEPWIICDEHSGVISQTPSDCVVCVSIAEISSCIVQASAAFLLGIFVRASC 476
A P PW E +GV + C V S+A + +V A+A + + R +C
Sbjct: 16 APPHPWEPRAEAAGVRHVRGTSCAVGPSLAAVVEEMVVAAAVVVSWLASRCAC 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,474,549
Number of Sequences: 37544
Number of extensions: 328056
Number of successful extensions: 819
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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