Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4g20
         (645 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80064-1|AAC24158.1|  972|Drosophila melanogaster DNA topoisomer...    30   2.3  
M74557-1|AAA28951.1|  972|Drosophila melanogaster topoisomerase ...    30   2.3  
BT023755-1|AAZ41763.1|  974|Drosophila melanogaster RE58921p pro...    30   2.3  
AE014298-2126|AAN09660.1|  581|Drosophila melanogaster CG6146-PB...    30   2.3  
AE014298-2125|AAX52496.1|  974|Drosophila melanogaster CG6146-PC...    30   2.3  
AE014298-2124|AAF48440.1|  974|Drosophila melanogaster CG6146-PA...    30   2.3  

>U80064-1|AAC24158.1|  972|Drosophila melanogaster DNA topoisomerase I
            protein.
          Length = 972

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 19/81 (23%), Positives = 36/81 (44%)
 Frame = +3

Query: 111  KVYRISIVLDKLLDYYERKPSKDPEWYIALGMARGQLEYTINELDKAVPEKLKENLKNIT 290
            + Y  S  L   LD      +  PE  +A   A   +    N   ++VP+  +++++N+ 
Sbjct: 812  RTYNASKTLQSQLDLLTDPSATVPEKLLAYNRANRAVAILCNH-QRSVPKSHEKSMENLK 870

Query: 291  RRIDRVRKKIDMGNLVYRSKD 353
             +I   R+ I+     Y S+D
Sbjct: 871  EKIKAKREAIEKCESEYHSRD 891


>M74557-1|AAA28951.1|  972|Drosophila melanogaster topoisomerase I
            protein.
          Length = 972

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 19/81 (23%), Positives = 36/81 (44%)
 Frame = +3

Query: 111  KVYRISIVLDKLLDYYERKPSKDPEWYIALGMARGQLEYTINELDKAVPEKLKENLKNIT 290
            + Y  S  L   LD      +  PE  +A   A   +    N   ++VP+  +++++N+ 
Sbjct: 812  RTYNASKTLQSQLDLLTDPSATVPEKLLAYNRANRAVAILCNH-QRSVPKSHEKSMENLK 870

Query: 291  RRIDRVRKKIDMGNLVYRSKD 353
             +I   R+ I+     Y S+D
Sbjct: 871  EKIKAKREAIEKCESEYHSRD 891


>BT023755-1|AAZ41763.1|  974|Drosophila melanogaster RE58921p protein.
          Length = 974

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 19/81 (23%), Positives = 36/81 (44%)
 Frame = +3

Query: 111  KVYRISIVLDKLLDYYERKPSKDPEWYIALGMARGQLEYTINELDKAVPEKLKENLKNIT 290
            + Y  S  L   LD      +  PE  +A   A   +    N   ++VP+  +++++N+ 
Sbjct: 814  RTYNASKTLQSQLDLLTDPSATVPEKLLAYNRANRAVAILCNH-QRSVPKSHEKSMENLK 872

Query: 291  RRIDRVRKKIDMGNLVYRSKD 353
             +I   R+ I+     Y S+D
Sbjct: 873  EKIKAKREAIEKCESEYHSRD 893


>AE014298-2126|AAN09660.1|  581|Drosophila melanogaster CG6146-PB,
           isoform B protein.
          Length = 581

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 19/81 (23%), Positives = 36/81 (44%)
 Frame = +3

Query: 111 KVYRISIVLDKLLDYYERKPSKDPEWYIALGMARGQLEYTINELDKAVPEKLKENLKNIT 290
           + Y  S  L   LD      +  PE  +A   A   +    N   ++VP+  +++++N+ 
Sbjct: 421 RTYNASKTLQSQLDLLTDPSATVPEKLLAYNRANRAVAILCNH-QRSVPKSHEKSMENLK 479

Query: 291 RRIDRVRKKIDMGNLVYRSKD 353
            +I   R+ I+     Y S+D
Sbjct: 480 EKIKAKREAIEKCESEYHSRD 500


>AE014298-2125|AAX52496.1|  974|Drosophila melanogaster CG6146-PC,
            isoform C protein.
          Length = 974

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 19/81 (23%), Positives = 36/81 (44%)
 Frame = +3

Query: 111  KVYRISIVLDKLLDYYERKPSKDPEWYIALGMARGQLEYTINELDKAVPEKLKENLKNIT 290
            + Y  S  L   LD      +  PE  +A   A   +    N   ++VP+  +++++N+ 
Sbjct: 814  RTYNASKTLQSQLDLLTDPSATVPEKLLAYNRANRAVAILCNH-QRSVPKSHEKSMENLK 872

Query: 291  RRIDRVRKKIDMGNLVYRSKD 353
             +I   R+ I+     Y S+D
Sbjct: 873  EKIKAKREAIEKCESEYHSRD 893


>AE014298-2124|AAF48440.1|  974|Drosophila melanogaster CG6146-PA,
            isoform A protein.
          Length = 974

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 19/81 (23%), Positives = 36/81 (44%)
 Frame = +3

Query: 111  KVYRISIVLDKLLDYYERKPSKDPEWYIALGMARGQLEYTINELDKAVPEKLKENLKNIT 290
            + Y  S  L   LD      +  PE  +A   A   +    N   ++VP+  +++++N+ 
Sbjct: 814  RTYNASKTLQSQLDLLTDPSATVPEKLLAYNRANRAVAILCNH-QRSVPKSHEKSMENLK 872

Query: 291  RRIDRVRKKIDMGNLVYRSKD 353
             +I   R+ I+     Y S+D
Sbjct: 873  EKIKAKREAIEKCESEYHSRD 893


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,244,370
Number of Sequences: 53049
Number of extensions: 584360
Number of successful extensions: 1645
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1645
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2724262200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)