Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4g13
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   3.8  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    25   6.6  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    25   8.7  

>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 248  SLHLYCYNQIVLSLIVILLETITNHECVSNNFRADLICDFNLLRLK 385
            S+H  C    V S +++  E ++  EC     RAD  CD+N  RLK
Sbjct: 1253 SIHKKCR---VGSSLLVKEEVLSKCECT----RADFECDYNYRRLK 1291


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 3   FSKISKKMCSFILS*ANYKINSVLNKINRRTI*TVVIWKTDIIKNKP 143
           F +I K    +       KI  V  K N+R +  V +W+ +I++N P
Sbjct: 155 FEQIKKSAMRYDRQKQKEKIKMVEQK-NKRNLYLVNVWEREILRNWP 200


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 150 QCATGTAASSQELEKDNNLLCAFRNL 227
           Q A G +  + ELE   NLL  F NL
Sbjct: 355 QFAAGLSLLASELESQKNLLKKFENL 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,836,066
Number of Sequences: 5004
Number of extensions: 33597
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)