Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4g13
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0062 + 17607290-17608852                                         28   5.0  
05_04_0064 - 17613070-17614749                                         27   8.8  

>05_04_0062 + 17607290-17608852
          Length = 520

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = -3

Query: 400 KLILNFKTK*IKITNEISTKVIRYAFMVSNSF 305
           ++++NF+ +  KI+   S   +RY F+++NS+
Sbjct: 361 QMLINFEDQLEKISESFSDPSLRYLFLLNNSY 392


>05_04_0064 - 17613070-17614749
          Length = 559

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 439 SSGCKVIVH*ITIKLILNFKTK*IKITNEISTKVIRYAFMVSNSF 305
           S  C  IV  +  ++I+ F  +  K +   S   +RY F+++NS+
Sbjct: 385 SQNCWEIVQSLIEQMIITFLDQLEKKSESFSDPSLRYIFLINNSY 429


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,309,580
Number of Sequences: 37544
Number of extensions: 173136
Number of successful extensions: 382
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)