Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4g05
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    29   0.52 
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    29   0.52 
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    28   1.6  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    27   2.8  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   3.7  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    27   3.7  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    26   4.8  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    25   8.5  

>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 171 FGENLIIQLQPIQHVEGVMKLQRKIKQEIEFLKRLEKSKN 290
           +G ++   ++P  H +G   +QRK+ Q +E +  LEKS N
Sbjct: 79  YGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDN 118


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 171 FGENLIIQLQPIQHVEGVMKLQRKIKQEIEFLKRLEKSKN 290
           +G ++   ++P  H +G   +QRK+ Q +E +  LEKS N
Sbjct: 79  YGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDN 118


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
 Frame = +3

Query: 114 MSKINHAEDLVEVVKDKIKFGENLIIQL--QPIQHVE-GVMKLQRKIKQEIEFL-KRLEK 281
           +S+  HA DLV  +++  K+G+   I +   P  HV+  V +L +   ++I FL +++E 
Sbjct: 125 VSEFEHAVDLVRYIRE--KYGDYFCIGVAAYPEGHVDSNVPELSKDPLRDIPFLIEKVEA 182

Query: 282 SKNFKIEQL 308
             +F I Q+
Sbjct: 183 GADFIITQI 191


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 307 NCSILKFFDFSNLFKNSISCL 245
           N SILKF  F  +FKN+++ L
Sbjct: 87  NLSILKFLGFEQIFKNALTGL 107


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 476 FWISCYHFGPCIALIPNNVYY 414
           F I+CYH+  C++L+   ++Y
Sbjct: 66  FTIACYHYSLCLSLVALLLFY 86


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1064

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +3

Query: 114  MSKINHAEDLVEVVKDKIK-FGENLIIQLQPIQHVEGVMKLQRKIKQEIEFLK 269
            M+++  A  L  V  +++K F +N  + L  I+ VEG +++ R ++ + EFLK
Sbjct: 904  MARVKKA--LPNVTSEEVKEFQKNKKMVLDGIELVEGDLQIIRSVEVKNEFLK 954


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 237 RKIKQEIEFLKRLEKSKN-FKIEQLACSNL 323
           +K+KQ  EFL+++E   N F   +  CSNL
Sbjct: 674 QKLKQNPEFLRKMEVYNNQFSKNKELCSNL 703


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/69 (20%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +3

Query: 108 LIMSKINHAEDLVEVVKDKIKFGENLIIQLQPIQHVEGVMKLQRKIKQEIEF-LKRLEKS 284
           ++ +K+N  + +   +   +K  E  +++L  ++H   ++   +++  +IE   K+LE  
Sbjct: 273 ILHTKLNSLQLIEGDLNACLKVLEECLVELDKLEHATVLLSTNQELCDQIEINKKKLEFR 332

Query: 285 KNFKIEQLA 311
           K   ++QL+
Sbjct: 333 KEQLLKQLS 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,127
Number of Sequences: 5004
Number of extensions: 62794
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)