Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4g05
(735 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0024 + 159595-159801,159892-160017,160201-160338,160431-16... 29 2.9
08_02_0511 + 18002930-18003104,18003137-18003180,18003194-18003793 29 3.8
06_01_1050 + 8262033-8262165,8262262-8262391,8262486-8263026 29 3.8
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 29 3.8
11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152 29 5.1
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 28 6.7
12_02_0995 + 25104303-25104486,25105164-25105275,25106466-251065... 28 8.8
04_04_1615 + 34793511-34793660,34794013-34794070,34794163-347944... 28 8.8
>02_01_0024 +
159595-159801,159892-160017,160201-160338,160431-160526,
160958-161200,161249-161537,161612-161781,161975-162052,
162156-162227,162345-162449,162555-162647,162737-162829,
163109-163235,163317-163330
Length = 616
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 108 LIMSKINHAEDLVEVVKDKIKFGENLIIQLQPIQ 209
L+ KIN+A DL+ +++D I+ G ++I + I+
Sbjct: 291 LVDKKINNARDLITILEDAIRGGYPILIVTEDIE 324
>08_02_0511 + 18002930-18003104,18003137-18003180,18003194-18003793
Length = 272
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -3
Query: 682 GKISPFTTIPTALNLFAKFSSIPLINSNTTFGGW 581
GK++ TIP+ +N + + +P + +N GW
Sbjct: 220 GKVAGLRTIPSVVNRIVRATILPRLGNNDDIRGW 253
>06_01_1050 + 8262033-8262165,8262262-8262391,8262486-8263026
Length = 267
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 396 DNCNKLIIDIVGDQGNTWTKVIARNP 473
D+ +L+ID+ GN W+K+ AR P
Sbjct: 72 DDEERLVIDLHAQLGNRWSKIAARLP 97
>01_01_0128 -
1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = -1
Query: 507 KISLHLKQIKILDFLLSLWSMYCLDPQQCLLLVYYSYLCEMFYTQRAH 364
++SL + + ++ + L SM P+ +L+VYY+ L E+F+ H
Sbjct: 243 ELSLWQEAFRSVEDIHGLMSMVKKTPKPSVLVVYYAKLTEIFWISDCH 290
>11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152
Length = 1044
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +3
Query: 114 MSKINHAEDLVEVVKDKIKFGENLIIQLQPIQHVEGVMKLQRKIKQEIEFLKRLEKSKN 290
++K+ E L +V + K+K + L + H+ G KL K+KQ+ E + L K K+
Sbjct: 651 IAKLKDLEAL-DVRRSKVKIMPVEVFGLPCLIHLLGKFKLSDKVKQKTEVQEFLSKGKS 708
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 408 KLIIDIVGDQGNTWTKVIARNP 473
KL+ID+ GN W+K+ AR P
Sbjct: 1763 KLVIDLHEQLGNRWSKIAARLP 1784
>12_02_0995 +
25104303-25104486,25105164-25105275,25106466-25106554,
25106635-25106703,25106784-25106913,25107073-25107231,
25107364-25107736,25108070-25108182,25108429-25108624,
25108855-25109288,25109360-25109495,25109668-25111086
Length = 1137
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 325 RRLEQANCSILKFFDFSNLFKNSISCLIF 239
+RL + L+FF +++F +S CL+F
Sbjct: 390 KRLVELGWKTLEFFALAHIFSSSFGCLVF 418
>04_04_1615 +
34793511-34793660,34794013-34794070,34794163-34794410,
34794485-34794601,34795309-34795369,34795860-34795954,
34796048-34796122,34796316-34796401,34796529-34796578,
34796667-34796707,34796784-34796948,34797204-34797271,
34797362-34797422,34797878-34798393
Length = 596
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 105 INFALKQFYFKVPFDSCFIKQRMYKFSRFVITF 7
I+F L Q+ F +DSCFIK + + R ++ F
Sbjct: 376 IHFILFQWQFG--YDSCFIKNHLIVYCRLILGF 406
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,515,039
Number of Sequences: 37544
Number of extensions: 360019
Number of successful extensions: 779
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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