Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4g05
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41278-2|AAK31509.1|  403|Caenorhabditis elegans Hypothetical pr...    52   6e-07
Z82264-3|CAB05166.1|  277|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U55367-2|AAA97988.2|  356|Caenorhabditis elegans G protein, alph...    29   3.4  
AY008132-1|AAG32085.1|  356|Caenorhabditis elegans heterotrimeri...    29   3.4  

>U41278-2|AAK31509.1|  403|Caenorhabditis elegans Hypothetical
           protein F33G12.3 protein.
          Length = 403

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 2/187 (1%)
 Frame = +3

Query: 135 EDLVEVVKDKIKFGENLIIQLQ--PIQHVEGVMKLQRKIKQEIEFLKRLEKSKNFKIEQL 308
           +DL     +KIK  +  + +L     Q +E + +++R + +EIE L+   + K  +   +
Sbjct: 7   DDLERQRIEKIKEVQEAVAKLTGAKFQKLENLQRMERMLNKEIELLQNATR-KALETHLV 65

Query: 309 ACSNLRHLGSMVECALRPYVLAVCKTFHIDNCNKLIIDIVGDQGNTWTKVIARNPXXXXX 488
            C+   +   + E        AV KTF  DN + + +DIV  + N W K++ R P     
Sbjct: 66  TCNYAFYKSIIDEVEEMENATAVLKTFKRDNVS-VTVDIVMKEPNVWIKLVNR-PAKTVL 123

Query: 489 XXXXXXXXXARSILDQADDYLKCSRLYPCMYQPPKVVFEFMSGIEENLANKLRAVGIVVK 668
                       ++ Q   +L  SR     +  P++   F +G+   +A KL   GIVV 
Sbjct: 124 IEYRDGKRNG-DVIAQIKQHLFVSR----RFNRPQIRIYFRNGVLAEMAQKLIRHGIVVI 178

Query: 669 GEILPNS 689
           GE +  S
Sbjct: 179 GEHVDKS 185


>Z82264-3|CAB05166.1|  277|Caenorhabditis elegans Hypothetical
           protein C49C3.7 protein.
          Length = 277

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/61 (27%), Positives = 37/61 (60%)
 Frame = +3

Query: 123 INHAEDLVEVVKDKIKFGENLIIQLQPIQHVEGVMKLQRKIKQEIEFLKRLEKSKNFKIE 302
           + + ED  ++VK++    +N   +    ++VE ++K   ++K+E+EFLKR +    FK++
Sbjct: 41  LTYTEDQYKIVKEESTIYKNRF-ETAAAKNVE-LLKATDELKKELEFLKR-QPGNQFKVD 97

Query: 303 Q 305
           +
Sbjct: 98  K 98


>U55367-2|AAA97988.2|  356|Caenorhabditis elegans G protein, alpha
           subunit protein 10 protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +3

Query: 225 MKLQRKIKQEIEFLKRLEKSKNFKIEQ 305
           MK Q K+ +EIE  K+LEK KN ++EQ
Sbjct: 13  MKDQIKVNKEIE--KQLEKKKNMQLEQ 37


>AY008132-1|AAG32085.1|  356|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +3

Query: 225 MKLQRKIKQEIEFLKRLEKSKNFKIEQ 305
           MK Q K+ +EIE  K+LEK KN ++EQ
Sbjct: 13  MKDQIKVNKEIE--KQLEKKKNMQLEQ 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,746,283
Number of Sequences: 27780
Number of extensions: 346027
Number of successful extensions: 867
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)