Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4g03
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.1
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 28 1.4
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 27 1.9
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 27 2.5
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 2.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 4.4
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar... 26 5.8
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 5.8
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 5.8
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 25 7.6
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 7.6
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 25 7.6
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 7.6
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -3
Query: 395 SPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFSGIFGFRHPTAAMKYFPSLISH 234
S F+STT +++ +ST SSS + S+ S P ++ + SL SH
Sbjct: 353 SSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSH 406
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = -2
Query: 678 SVKQRV-HCGALSSGAVLHLRRGVVDKPTAANIAAIRCSSAVKYSRRRLTLGLATDRCLL 502
SVKQR HC AL+ A + + NI + + L + TD+ +
Sbjct: 20 SVKQRYFHCSALNGVASMFRMPALSPTMEEGNITKWHFKEGDSFKSGDILLEVETDKATM 79
Query: 501 DAAHSDNSRIWLVLL 457
D DN + VL+
Sbjct: 80 DVEVQDNGILAKVLI 94
>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 190 PWQEWSDHYTCHRYRCEIRDG 252
P+Q+W D+Y C Y +R G
Sbjct: 478 PYQKWVDNYFCEDYLSAVRRG 498
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 594 AANIAAIRCSSAVKYSRRRLTLGLATDRCLLDAAHSDNSRIWLVLL 457
AA I C+S +K L +G ++ CLL S +S I L LL
Sbjct: 345 AALIFQFGCNSTIKVPISLLVIGQVSNICLLGIRPSTDSEIVLGLL 390
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.1 bits (57), Expect = 2.5
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Frame = +1
Query: 385 VNGERIVQTRGQPGEL--FPDKPWKGQQNEPNPAVVGMSGIQQTPVGGEPQGQASPGIFN 558
VNG + G G + +P P + P P GM+ P G P PG
Sbjct: 495 VNGRGMPMVPGHNGPMPMYPGMPTQFPAGGPAPGYPGMNARGPVPAQGRP--MMMPGSVP 552
Query: 559 SRGAADGSDI 588
S G A+ +
Sbjct: 553 SAGPAEAEAV 562
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 440 SGNSSPGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFS 297
S +SSP T SP +S++ + + +S+ SSS S SS+ S
Sbjct: 139 SSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 186
>SPAC977.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/72 (23%), Positives = 27/72 (37%)
Frame = -1
Query: 571 LLLCC*IFQETPDPGARHRPVSAGCRSFRQQQDLARFVGPSMVYRGTVRQAALWFALFSL 392
LL C I+ E P ++ R + GC + RF+ + LFS+
Sbjct: 52 LLYCWYIYSEVPSASSKFRSFTFGCVVVYHNKFFPRFIRTHSINSIRTFSKFQVIILFSI 111
Query: 391 HLLRRRNAIAHS 356
+ R + HS
Sbjct: 112 EKVTRSESKNHS 123
>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/72 (23%), Positives = 27/72 (37%)
Frame = -1
Query: 571 LLLCC*IFQETPDPGARHRPVSAGCRSFRQQQDLARFVGPSMVYRGTVRQAALWFALFSL 392
LL C I+ E P ++ R + GC + RF+ + LFS+
Sbjct: 52 LLYCWYIYSEVPSASSKFRSFTFGCVVVYHNKFFPRFIRTHSINSIRTFSKFQVIILFSI 111
Query: 391 HLLRRRNAIAHS 356
+ R + HS
Sbjct: 112 EKVTRSESKNHS 123
>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/72 (23%), Positives = 27/72 (37%)
Frame = -1
Query: 571 LLLCC*IFQETPDPGARHRPVSAGCRSFRQQQDLARFVGPSMVYRGTVRQAALWFALFSL 392
LL C I+ E P ++ R + GC + RF+ + LFS+
Sbjct: 52 LLYCWYIYSEVPSASSKFRSFTFGCVVVYHNKFFPRFIRTHSINSIRTFSKFQVIILFSI 111
Query: 391 HLLRRRNAIAHS 356
+ R + HS
Sbjct: 112 EKVTRSESKNHS 123
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/39 (23%), Positives = 21/39 (53%)
Frame = -2
Query: 360 TARGEFDILIFDVFVAFQCVFRYFWFSTSDSSYEVFPVS 244
T +GE D+ + + V++ +W + ++ +FPV+
Sbjct: 229 TEQGELSFKKGDIILVLESVYKDWWKGSCKNAVGIFPVN 267
>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/72 (23%), Positives = 27/72 (37%)
Frame = -1
Query: 571 LLLCC*IFQETPDPGARHRPVSAGCRSFRQQQDLARFVGPSMVYRGTVRQAALWFALFSL 392
LL C I+ E P ++ R + GC + RF+ + LFS+
Sbjct: 52 LLYCWYIYSEVPSVSSKFRSFTFGCVVVYHNKFFPRFIRTHSINSIRTFSKFQVIILFSI 111
Query: 391 HLLRRRNAIAHS 356
+ R + HS
Sbjct: 112 EKVTRSESKNHS 123
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = -2
Query: 672 KQRVHCGALSSGAVLHLRRGVVDKPTAANIAAIRCSSAVKYSRRRLTLGLATDRCLLDAA 493
++ + C A++S L G+ NI+ + +KYS L++GL+ D C L
Sbjct: 250 QKSITCLAMNSENTRLLSGGLDGHVKIYNISDWKVVHGMKYSGPILSMGLSPDSCNLVVG 309
Query: 492 HSDNS 478
S+ +
Sbjct: 310 MSNGT 314
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 274 GCRKPKIPENALECHEYIEDEN 339
G K IP+N EC E + DE+
Sbjct: 1567 GRSKVTIPQNMFECKELVADEH 1588
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,010,680
Number of Sequences: 5004
Number of extensions: 65719
Number of successful extensions: 213
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -