Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4g02
         (709 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q23YG6 Cluster: Cation channel family protein; n=2; cel...    36   0.98 
UniRef50_Q6FVC8 Cluster: Similarities with sp|P53189 Saccharomyc...    35   2.3  
UniRef50_Q5H9W2 Cluster: B1168G10.8 protein; n=2; Oryza sativa|R...    34   3.0  

>UniRef50_Q23YG6 Cluster: Cation channel family protein; n=2; cellular
            organisms|Rep: Cation channel family protein -
            Tetrahymena thermophila SB210
          Length = 2014

 Score = 35.9 bits (79), Expect = 0.98
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
 Frame = -2

Query: 570  KLLKTVVALPSTITRRDVIRPSTTLQVEQRHLFSSR*IQYINXKRQRD----CKTKRSRH 403
            K+ K V+ LPS    + +I P T  ++ Q  L S++ +QY+  +R+       KT R +H
Sbjct: 819  KIQKNVIKLPSITQVQQMIFPKTLEEINQDILVSNQKLQYLTSQRKYSVNLTLKTSRQQH 878

Query: 402  PHNNHRQ 382
              N + Q
Sbjct: 879  NRNPYGQ 885


>UniRef50_Q6FVC8 Cluster: Similarities with sp|P53189 Saccharomyces
           cerevisiae YGL028c; n=1; Candida glabrata|Rep:
           Similarities with sp|P53189 Saccharomyces cerevisiae
           YGL028c - Candida glabrata (Yeast) (Torulopsis glabrata)
          Length = 498

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 22/65 (33%), Positives = 31/65 (47%)
 Frame = -3

Query: 416 SAPVIRTTTIDKQHCSSTTSETKLIGAYAGAGLVPAATNIRANSVQTFXEEQQNAHNTEL 237
           S+  I TTT      SS++S +    +   A  V    N+ AN  Q   EEQQ+ HNT  
Sbjct: 136 SSSSIPTTTPSSSSSSSSSSSSIQSSSIRFASQVVNLENVEANQNQQKQEEQQHVHNTAH 195

Query: 236 LGSQV 222
           + + V
Sbjct: 196 ISTPV 200


>UniRef50_Q5H9W2 Cluster: B1168G10.8 protein; n=2; Oryza sativa|Rep:
           B1168G10.8 protein - Oryza sativa (Rice)
          Length = 62

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 682 YANKRNTLNLACHANYTNISLIIHNQR 602
           Y+  RN LNL CH    N+S I HN++
Sbjct: 13  YSATRNFLNLTCHQKKNNVSYIFHNRK 39


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 661,712,177
Number of Sequences: 1657284
Number of extensions: 12693085
Number of successful extensions: 33796
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33764
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)