Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4g02
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    32   0.092
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    29   0.49 
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.0  
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    25   8.0  

>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 31.9 bits (69), Expect = 0.092
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -3

Query: 347 LIGAYAGAGLVPAATNIRANSVQTFXEEQQNAHNTELLGSQVNAGYRGNPPTXTPDG 177
           +IG  +    +PA+ N+RA  + T     QN   T  +    N+  +G+P   T +G
Sbjct: 354 VIGNQSSPTGIPASPNVRATQIATQVPNPQNTPTTTAVPGITNSSNQGDPQASTFNG 410


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -1

Query: 688 FNYANKRNTLNLACHANYTNISLIIHNQ---RPYVSRGK*TDQTIKNSSCPSVNHNST 524
           FNY N  N  N + H  + N     +NQ     Y+S G+  +Q+ +N+   +VN+ ST
Sbjct: 324 FNYNNSGNNRNESGHPRFRNSRRNYNNQGAYPTYMSNGRSANQSPRNNP-QNVNNGST 380


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 591 PEESKQIKLLKTVVALPSTITRRDVIRPSTTLQ 493
           PEES    L K + ALP++   R +++P+  LQ
Sbjct: 419 PEESPMTFLQKKMAALPTSSPVRPMLKPTLQLQ 451


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 18  RAGGRTSYEVPAPRGRAGYVGLDDLQGVXPGAQGIL 125
           R G   + ++ A  GRA YVG DD++    GA G++
Sbjct: 538 RKGADATADMQAKLGRAVYVG-DDVKVPDAGALGVV 572


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,954
Number of Sequences: 5004
Number of extensions: 49329
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)