Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4g02
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351     31   1.2  
03_05_0370 + 23541188-23542537                                         28   6.3  
03_01_0344 + 2704860-2705156,2705249-2705494                           28   8.4  

>09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351
          Length = 415

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +2

Query: 485 CSTCKVVDGLMTSRRVMVDGRATTVFNSLICLLSSGN 595
           CS CKV    MTS R +V+ RA+ +  S +  L SGN
Sbjct: 315 CSLCKVT---MTSPRALVEHRASLLHRSNLAPLRSGN 348


>03_05_0370 + 23541188-23542537
          Length = 449

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 413 APVIRTTTIDKQHCSSTTSETKLIGAYAGAGLVPAATNI 297
           +P I    +     SS    T L+ AYA AGL  AA+ +
Sbjct: 19  SPAIHANLVKSSSISSPIPATALLTAYANAGLPAAASRL 57


>03_01_0344 + 2704860-2705156,2705249-2705494
          Length = 180

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 303 SGGGN*SGARVGTNQFGLARC*AAVLFVYGCCADDGSALF 422
           SG G   G+  G  +F   +C A  +F    CA+DG+A F
Sbjct: 4   SGVGGVPGSPCGACKFLRRKCAAECVFAPYFCAEDGAAQF 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,484,605
Number of Sequences: 37544
Number of extensions: 365222
Number of successful extensions: 894
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)