Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4g02
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82266-5|CAB05183.2|   82|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U40800-14|AAA81498.4|  727|Caenorhabditis elegans Hypothetical p...    29   3.3  
AF038621-4|AAK71387.2| 1064|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z69360-6|CAA93282.1|  599|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen prot...    27   9.9  

>Z82266-5|CAB05183.2|   82|Caenorhabditis elegans Hypothetical
           protein F23B2.8 protein.
          Length = 82

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 425 VKQSAPVIRTTTIDKQHCSSTTSETK-LIGAYAG 327
           +KQ  P+IR   ++K +CSS T  +K  IG  AG
Sbjct: 8   LKQMFPIIRKIFVEKSNCSSNTHHSKRSIGETAG 41


>U40800-14|AAA81498.4|  727|Caenorhabditis elegans Hypothetical
           protein D2096.11 protein.
          Length = 727

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 216 RVPREPPYXDPGRRSDVGCES 154
           R+PR P    PGR+S VGC S
Sbjct: 658 RIPRTPSDKTPGRQSRVGCVS 678


>AF038621-4|AAK71387.2| 1064|Caenorhabditis elegans Hypothetical
            protein M116.5 protein.
          Length = 1064

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 216  RVPREPPYXDPGRRSDVGCES 154
            R+PR P    PGR+S VGC S
Sbjct: 991  RIPRTPSDKTPGRQSRVGCVS 1011


>Z69360-6|CAA93282.1|  599|Caenorhabditis elegans Hypothetical
           protein F25H8.6 protein.
          Length = 599

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
 Frame = -3

Query: 449 LIXRDNVTVKQSAPVIRTTTIDKQHCSSTT--SETKLIGAYAGAGLVPAATNIRANSVQT 276
           ++ +++ T  Q +P   ++  D    +S++  S   LIG  A   + P A    +NS+  
Sbjct: 214 IVKKESQTESQKSPSASSSASDTASSASSSHFSTNPLIGLPAPVAIKPPAPPTPSNSILN 273

Query: 275 FXEEQQNAHNTELLGSQVNAGYRGNPPTXTPDGD 174
             + Q    N   +    N     N PT   + D
Sbjct: 274 LSQSQNQCQNQNPMFQSQNI---KNEPTDVEEED 304


>AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen protein
           103 protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +3

Query: 48  PAPRGRAGYVGLDDLQGVXPGAQGILG 128
           P PRG  G  GLD L G  PG  G  G
Sbjct: 142 PGPRGPPGQAGLDGLPGA-PGQPGSNG 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,197,477
Number of Sequences: 27780
Number of extensions: 300065
Number of successful extensions: 782
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)