Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4g01
         (305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    29   0.85 
AF026213-9|AAB71302.2|  615|Caenorhabditis elegans Protein kinas...    28   1.1  
Z82077-2|CAB04940.1|  722|Caenorhabditis elegans Hypothetical pr...    27   2.6  
Z49937-5|CAC42288.1|  296|Caenorhabditis elegans Hypothetical pr...    27   2.6  
U29184-1|AAC47542.1|  296|Caenorhabditis elegans MAB-18 protein.       27   2.6  
Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z83731-8|CAH10801.1| 1490|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z83731-7|CAH10800.1| 1046|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z81505-4|CAH10794.1| 1490|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z81505-3|CAH10793.1| 1046|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin f...    27   3.4  
AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin f...    27   3.4  
AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase prot...    26   4.5  
AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    26   4.5  
AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase prot...    26   4.5  
Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical p...    25   7.9  

>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 273  FSVQSKLQHKSQIRMPTEPVQTVLPPLN 190
            FS+Q K Q  S+IR     V TV+PP N
Sbjct: 2638 FSLQIKSQSDSKIRSACHVVVTVIPPTN 2665


>AF026213-9|AAB71302.2|  615|Caenorhabditis elegans Protein kinase
           protein 9, isoform b protein.
          Length = 615

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -3

Query: 252 QHKSQIRMPTEPVQTVLPPLNASPMSRRTRTWSRSPYAANGPASPVYGDASVLP 91
           Q  + ++   + +  V PP+ + P S+    W+  PY     AS  Y     LP
Sbjct: 92  QALNNVKSTIDTINEVEPPITSPPRSQYQAPWNNQPYQQGSWASQ-YAPYPTLP 144


>Z82077-2|CAB04940.1|  722|Caenorhabditis elegans Hypothetical
           protein W09C5.5 protein.
          Length = 722

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = -1

Query: 164 APGRAVRTPPTVPRLPS--TGTPACCL-TAVSLSRETNPASYRHF 39
           APG     PP +P +P+  TG P   L T   L       SYR F
Sbjct: 153 APGAQPSRPPILPPIPTTPTGFPVAALSTPTGLPHTLIEHSYRQF 197


>Z49937-5|CAC42288.1|  296|Caenorhabditis elegans Hypothetical
           protein F14F3.1c protein.
          Length = 296

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = -3

Query: 228 PTEPVQTVLPPLNASPMSRRTRTWSRSPYAANGPASPVYGDASVLPDSSFSLTRNQSGF 52
           P   ++  LP   AS + +  R    SPY    P +    DA+        L RN++ F
Sbjct: 7   PIVSIKAPLPTRRASTIRKTARVGKFSPYEDQKPPTEPEDDAAARMRLKRKLQRNRTSF 65


>U29184-1|AAC47542.1|  296|Caenorhabditis elegans MAB-18 protein.
          Length = 296

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = -3

Query: 228 PTEPVQTVLPPLNASPMSRRTRTWSRSPYAANGPASPVYGDASVLPDSSFSLTRNQSGF 52
           P   ++  LP   AS + +  R    SPY    P +    DA+        L RN++ F
Sbjct: 7   PIVSIKAPLPTRRASTIRKTARVGKFSPYEDQKPPTEPEDDAAARMRLKRKLQRNRTSF 65


>Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical
           protein F16A11.3b protein.
          Length = 1364

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 41  NVYRKPDWFLVREKLLSGS 97
           N  +KPDW  +R KL+ GS
Sbjct: 109 NDEKKPDWDAIRRKLIMGS 127


>Z83731-8|CAH10801.1| 1490|Caenorhabditis elegans Hypothetical
           protein F16A11.3a protein.
          Length = 1490

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 41  NVYRKPDWFLVREKLLSGS 97
           N  +KPDW  +R KL+ GS
Sbjct: 109 NDEKKPDWDAIRRKLIMGS 127


>Z83731-7|CAH10800.1| 1046|Caenorhabditis elegans Hypothetical
           protein F16A11.3c protein.
          Length = 1046

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 41  NVYRKPDWFLVREKLLSGS 97
           N  +KPDW  +R KL+ GS
Sbjct: 109 NDEKKPDWDAIRRKLIMGS 127


>Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical
           protein F16A11.3b protein.
          Length = 1364

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 41  NVYRKPDWFLVREKLLSGS 97
           N  +KPDW  +R KL+ GS
Sbjct: 109 NDEKKPDWDAIRRKLIMGS 127


>Z81505-4|CAH10794.1| 1490|Caenorhabditis elegans Hypothetical
           protein F16A11.3a protein.
          Length = 1490

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 41  NVYRKPDWFLVREKLLSGS 97
           N  +KPDW  +R KL+ GS
Sbjct: 109 NDEKKPDWDAIRRKLIMGS 127


>Z81505-3|CAH10793.1| 1046|Caenorhabditis elegans Hypothetical
           protein F16A11.3c protein.
          Length = 1046

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 41  NVYRKPDWFLVREKLLSGS 97
           N  +KPDW  +R KL+ GS
Sbjct: 109 NDEKKPDWDAIRRKLIMGS 127


>AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform a protein.
          Length = 427

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 192 NASPMSRRTRTWSRSPYAANGPA 124
           NA+   +RT T +R+P AA GPA
Sbjct: 377 NAAARRKRTATTTRTPPAAAGPA 399


>AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform b protein.
          Length = 451

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 192 NASPMSRRTRTWSRSPYAANGPA 124
           NA+   +RT T +R+P AA GPA
Sbjct: 401 NAAARRKRTATTTRTPPAAAGPA 423


>AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase protein.
          Length = 1262

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 207  VLPPLNASPMSRRTRTWSRSP 145
            V PP+ A+P +R TR+ +R+P
Sbjct: 1236 VAPPIPATPTTRTTRSSARTP 1256


>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 237 IRMPTEPVQTVLPPLNASPMSRRTRTWSRSPYAA 136
           IR P +    VLP ++ +P+ +RT  +  +PYA+
Sbjct: 302 IRAPKK--NPVLPKVHRNPLKKRTLLYKLNPYAS 333


>AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase protein 1
            protein.
          Length = 1262

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 207  VLPPLNASPMSRRTRTWSRSP 145
            V PP+ A+P +R TR+ +R+P
Sbjct: 1236 VAPPIPATPTTRTTRSSARTP 1256


>Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical
           protein T04A8.13 protein.
          Length = 791

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -1

Query: 167 PAPGRAVRTPPTVPRLPSTGTPACCLTAVSLSRETNPAS 51
           P P R    PPT  R P     ACC+   +    + P S
Sbjct: 204 PPPPRQNIPPPTPRRPPPKKKNACCVDISTFQETSFPVS 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,180,499
Number of Sequences: 27780
Number of extensions: 85458
Number of successful extensions: 357
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)