Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4g01
         (305 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   2.6  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   2.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   4.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   6.0  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 36  VKMSIGSRIGFS*ERNCCQ 92
           V+ S+ S  GFS E  CC+
Sbjct: 77  VQPSVASTTGFSKECYCCR 95


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 36  VKMSIGSRIGFS*ERNCCQ 92
           V+ S+ S  GFS E  CC+
Sbjct: 77  VQPSVASTTGFSKECYCCR 95


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 132 GPASPVYGDASVLPDSSFSLTR 67
           GPASP Y    V P     L R
Sbjct: 489 GPASPAYVHEDVSPTFEKPLVR 510


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = +2

Query: 23  HCALCQNVY 49
           HC +CQN +
Sbjct: 193 HCVVCQNFF 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,476
Number of Sequences: 438
Number of extensions: 1559
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)