Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4f24
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...   126   2e-30
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.7  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   8.1  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    25   8.1  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   8.1  

>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score =  126 bits (305), Expect = 2e-30
 Identities = 67/144 (46%), Positives = 87/144 (60%), Gaps = 1/144 (0%)
 Frame = +2

Query: 284 DKEGYTSFWNDCISSXXXXXXXXXXXXXXXXXXXXXXXXXKGLLSRKVI-VKSDTLTGDV 460
           DK+GY SFWND IS                          +  L+ +V+ +  + LTG+V
Sbjct: 73  DKQGYLSFWNDSISYSLRGCILMELAFRGKLRMQKDVNRKRFPLADRVVELVDEKLTGEV 132

Query: 461 LLDEALKHMKDTDPPETVQSWIEYLSGETWNPMKLKYQLKNVRERLAKNLVEKGVLTTEK 640
           LLDEA+K M  T    +V SWI+ +SGETWN MK+ YQL+ VRERLAK LV+KG+L  EK
Sbjct: 133 LLDEAIK-MIHTSELMSVTSWIDLMSGETWNVMKIGYQLRQVRERLAKGLVDKGILRNEK 191

Query: 641 QNFLLFDMTTHPLTDNVVKCRLVK 712
           +NFLLFDM THP+ D  +K  + K
Sbjct: 192 KNFLLFDMPTHPIADTSIKDSIKK 215


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 18/69 (26%), Positives = 35/69 (50%)
 Frame = +2

Query: 431  VKSDTLTGDVLLDEALKHMKDTDPPETVQSWIEYLSGETWNPMKLKYQLKNVRERLAKNL 610
            ++ D  TGD    E L  M+D + P+  +    Y++  +    +L+ +++NV +R     
Sbjct: 1307 IEGDAKTGDDNEMEDLDKMEDLEKPDYAEEKDPYITVMS----ELRSRIQNVPKRTVTVY 1362

Query: 611  VEKGVLTTE 637
             ++GV T E
Sbjct: 1363 SDEGVATLE 1371


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 605 F*PIFRVRSLTGISVSLDSMFHH 537
           F  IF    +TGI +++DS+F+H
Sbjct: 216 FKAIFVALLITGICITVDSLFYH 238


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +2

Query: 440 DTLTGDVLLDEALKHMKDTDPPETVQSWIEYLSGETWNPMKLKYQLKNVRERLAKNL 610
           +T+  D+LL +AL H KD      ++S  E   GE+ N  +L +++    E + + L
Sbjct: 13  ETVNKDILLKKALLHYKD-----AIKSEREGNLGESLNKYRLAHKVHEDVESIYRRL 64


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = -3

Query: 571 VFQFHWI-PCFTTQIFNPALYC---FWRVSIFHMF 479
           +F+ H + P F  QIF   L+C   +W  S+F MF
Sbjct: 192 LFKEHAVAPFFVFQIFCCVLWCLDDYWYFSLFSMF 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,782
Number of Sequences: 5004
Number of extensions: 43969
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)