Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4f20
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    27   1.7  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   3.9  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   3.9  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.0  

>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 15/67 (22%), Positives = 30/67 (44%)
 Frame = +1

Query: 100 QHFYENRVVRYHARLKKRSQDLREQCEAMSVRDITPQLKLEEVPELHFPAALDGAFTPSL 279
           QH    ++++Y         DL++ C    ++    +L L+  P+ +   + D AF   +
Sbjct: 99  QHLLVQKIIKYKNHQYYEILDLKKTCTDTEIKKSYKKLALQLHPDKNHAPSADEAF-KMV 157

Query: 280 EPGFQML 300
              FQ+L
Sbjct: 158 SKAFQVL 164


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -1

Query: 178 HTALLNPDFFFSI*HDILPHDFH--KNVASFRLLNLK-KLWTQHRQ 50
           HT   NP+ F++   D+LP   H   + A  RLL  K KL T   Q
Sbjct: 201 HTFRENPEIFYTFARDLLPETNHYSPSHAFIRLLEKKNKLSTLFTQ 246


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 98  KFPTFKSEKTLDTASANPDFNPLASLST 15
           K PTF+    L      PD  PL SLS+
Sbjct: 444 KSPTFEVSNRLGDVDTVPDLPPLGSLSS 471


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +1

Query: 199 ITPQLKLEEVP--ELHFPAALDGAFTPSLEPGFQM 297
           ITP L    +P     F A L    +P+L PGF M
Sbjct: 53  ITPTLPEMHLPVGNSKFQAVLPSLISPTLPPGFGM 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.130    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,796
Number of Sequences: 5004
Number of extensions: 28437
Number of successful extensions: 55
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)