Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4f20
(442 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0959 - 22885750-22886001,22886073-22886195,22886343-228864... 29 1.3
07_03_0337 + 16918613-16919078,16921610-16921725,16922039-169222... 28 3.8
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 28 3.8
02_01_0683 - 5067432-5067944 27 5.1
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414 27 6.7
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 27 8.8
>07_03_0959 -
22885750-22886001,22886073-22886195,22886343-22886429,
22886504-22886555,22886701-22886825,22887002-22887213,
22887317-22887518,22887928-22888032,22889643-22889704,
22889998-22890187,22890260-22890355,22890442-22890544,
22891448-22891551,22893284-22893370,22894033-22894118,
22894397-22894489,22895615-22895777,22895899-22896011,
22896113-22896235,22897393-22897444,22897843-22897886,
22897975-22898048,22898133-22898224,22899374-22899441,
22900817-22900892,22900952-22901215
Length = 1015
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 28 ASGLKSGFA-DAVSKVFSDLKVGNLQHFYENRVVRYHARLKKRSQDLREQCEAMSVRDIT 204
AS + S F+ DA+ + +DL N++ F+E++ L + EA++ I
Sbjct: 455 ASSVPSKFSPDAIQNILNDLTPDNVRIFWESKKFEGQTNLTEPWYGTSYSVEAVTPSIIQ 514
Query: 205 PQLKLEEVPELHFP 246
+ + + +LH P
Sbjct: 515 KWVNMAPMEDLHIP 528
>07_03_0337 +
16918613-16919078,16921610-16921725,16922039-16922208,
16922509-16922602,16923371-16923457,16923529-16923609,
16923800-16923925,16924541-16924649,16924723-16924802,
16925401-16925529,16925605-16925705,16926075-16926208,
16926307-16926404,16926488-16926607,16927008-16927022,
16927930-16927957,16928066-16928118,16928446-16928517,
16928605-16928652,16928928-16929033,16929110-16929168,
16929792-16929887,16929942-16929959
Length = 801
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +1
Query: 19 DKEASGLKSGFADAVSKVFSDLKVGNLQHF-YENRVVRYHARLKKRSQDLREQCEAMSVR 195
D + L + A K+ +LK + ++ + + R H R K+R QD++++ + M R
Sbjct: 143 DAKVQDLTAKLTQAQQKMDKELKERDEKYVELDTKFQRLHKRAKQRIQDIQKEKDDMEAR 202
Query: 196 DITPQLKLEEVPELHFPA 249
K E+ L A
Sbjct: 203 FNEINQKAEQASSLQSAA 220
>02_01_0084 -
573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 106 FYENRVVRYHARLKKRSQDLREQCEAMSVRDITPQ 210
+YEN +Y +LKK S D R ++D P+
Sbjct: 621 YYENSAFKYFEQLKKISTDFRMVLLGSPIKDNVPE 655
>02_01_0683 - 5067432-5067944
Length = 170
Score = 27.5 bits (58), Expect = 5.1
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 55 DAVSKVFSDLKVGNLQHFYE-NRVVRYHARLKKRSQDLREQCEAMSVRDITPQLKLEE 225
D +S S+L+ N + E N ++ HAR+ + + LRE EA ++ ++K+E+
Sbjct: 98 DELSSQVSELRDTNQRLLVELNHMISKHARIVRENSQLRE--EASDLQRKLSEMKMED 153
>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
Length = 520
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/47 (21%), Positives = 24/47 (51%)
Frame = +1
Query: 148 KRSQDLREQCEAMSVRDITPQLKLEEVPELHFPAALDGAFTPSLEPG 288
++ +D +++ S + +++ + +P A+D TPS +PG
Sbjct: 378 RKGKDTKDESGRFSALSSCDSPRQDDIDDADYPFAVDDVDTPSSQPG 424
>06_03_0924 -
25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +1
Query: 106 FYENRVVRYHAR--LKKRSQ---DLREQCEAMSVRDITPQLKLEEVPELHFPAA 252
FY NR + AR KKR+ L A ++ + P+L ++E+ H P A
Sbjct: 560 FYSNRKMSQQARSHAKKRATMGLKLVHSVPAQKLQTMKPKLSIKEIANFHRPKA 613
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.130 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,244,717
Number of Sequences: 37544
Number of extensions: 172397
Number of successful extensions: 398
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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