Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4f19
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 30 0.27
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 29 0.83
SPCC61.05 |||S. pombe specific multicopy membrane protein family... 28 1.1
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 27 1.9
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 27 2.5
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2... 27 3.4
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo... 26 4.4
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 5.9
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 7.8
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 25 7.8
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 30.3 bits (65), Expect = 0.27
Identities = 29/108 (26%), Positives = 45/108 (41%)
Frame = +2
Query: 236 FQLVASLGVSTCLIPGLGISISKRCSFSNTIPSFNLSQEQKYSILVDCTDFIHRSYEIPV 415
FQ++ G+S L P + +I KR S + + +L+ C FIH Y
Sbjct: 313 FQIILD-GMSRLLYPPMQSTIPKRSSL--------IMFDYYPLVLIFCKLFIH--YNERF 361
Query: 416 YKNIIMTLHLSDYLAALIQLSFAQLKKPGTYKDFVMTEEMYKTFTNDR 559
+ +I T D L+ LSF L P TY + + K T ++
Sbjct: 362 FHYLIDTDRAIDLFIFLLYLSFEYLGDPSTYNHLKLCVILLKRLTAEK 409
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 28.7 bits (61), Expect = 0.83
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = -1
Query: 366 IEYFCS*LKLKEGIVFEN----EHLFEIEIPSPGIRHVETPSD-ATNWKHVLR-TFCCLT 205
+++ S KLK+ ++ ++ H FEI P + H+E P + A KH + T CC
Sbjct: 445 VKFLTSCYKLKKLVLHDSLALAPHFFEIFASLPELEHLEIPDNVALQNKHAIHITDCCPN 504
Query: 204 L 202
L
Sbjct: 505 L 505
>SPCC61.05 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 469
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +2
Query: 221 VLRTCFQLVASLGVSTCLI-----PGLGISISKRCSFSNTIPSFNLSQEQKYSILVDCTD 385
+LRTC+ +A++ VS CL P LG +S F ++ L DC+
Sbjct: 380 LLRTCYIALAAVTVSNCLFLGVVRPLLGSQLS--LGFQLITSCITFVDFLVFAFLFDCSK 437
Query: 386 FIHRSYE 406
F+ Y+
Sbjct: 438 FVFLKYQ 444
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 639 CNTSNSFMSVGWKQVLTKLS*IFRYFCLSLVNVLYISSVMTKSLYVPGFF 490
C NSF + ++ L K+ FC L N ISS + +SL + GFF
Sbjct: 511 CEVCNSFCLLFDERSLFKIP-YHELFCALLKNPDIISSSVKQSLLLDGFF 559
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 107 DNYVLLKDLLHKIFEGIDELATEIRKDDTL 196
DN VL+KD IFE +++L ++ K++TL
Sbjct: 735 DNTVLMKDYSFTIFEKLNDLLDDV-KNETL 763
>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 482 AQLKKPGTYKDFVMTEEMYKTFTNDRQKYLKIYDNL 589
+Q+K+P T + E+ K + Q+ LK+YD L
Sbjct: 29 SQIKRPYTASTVAVLSEVTKAYYPSSQQALKLYDLL 64
>SPAC1F7.08 |fio1||iron transport multicopper oxidase
Fio1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 622
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 326 IPSFNLSQEQKYSILVDCTDFIHRSYEIPVY 418
+ S +L+ Q+YS+LV + R+Y I Y
Sbjct: 250 VSSIHLTVAQRYSVLVTAKNSTDRNYAITAY 280
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 242 LVASLGVSTCLIPGLGISISKRCSFSNTIPS 334
+ ASL +S +IP L +I+ R SF N P+
Sbjct: 263 IAASLPLSPSIIPPLVSAITDRLSFDNIKPA 293
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 390 IKSVQSTNIEYFCS*LKLKEGIVFENEHLFEIE 292
+ +V++TN++ + S L LKE + +E L +E
Sbjct: 279 LNNVETTNLKKYSSFLALKEAVSMTSEQLRVLE 311
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +2
Query: 38 TFISMFINEHTKNLDKTKGEPDFDNYVLLKDLLHKIFEGIDELATEIR 181
TF + +N H LDK G P + ++ + K I+ + IR
Sbjct: 568 TFEDLKVNTHLFRLDKPNGPPKYIHHFWVHTWFDKTHPDIESITGIIR 615
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,846
Number of Sequences: 5004
Number of extensions: 55025
Number of successful extensions: 150
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -