Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4f15
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.0  
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    24   7.1  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    24   7.1  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    23   9.4  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    23   9.4  

>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 86  TYFCCFFCRRKQIQSG*KR*CPN 154
           T++ C +CRR++I+    R C N
Sbjct: 22  THYLCLYCRRRKIKCDKNRPCHN 44


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 155 SLGISVFNHFEFVYVYKKNNKNMCSYFRKYIPF 57
           +L I VF+H E+V+++  ++        K + F
Sbjct: 110 NLDIQVFDHIEYVHIHWDHDTQFALELDKLVSF 142


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 140 VFNHFEFVYVYKKNNKNMCSYFRK 69
           V NH  F+YVY    +N    FR+
Sbjct: 517 VANHLNFMYVYSIIEQNRKGIFRE 540


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 199  RKKWKLSRNRKTQRRQLQG 255
            +KKWK  +  K +RR L G
Sbjct: 1257 KKKWKYQKQVKLRRRHLIG 1275


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 92  FCCFFCRRKQIQSG*KR*CPNFRN 163
           + CF+   K +QS   R   NFRN
Sbjct: 306 YSCFYSHAKMLQSHRNRVFHNFRN 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,000,102
Number of Sequences: 5004
Number of extensions: 16339
Number of successful extensions: 30
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)