Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4f12
(774 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9N592 Cluster: Putative uncharacterized protein; n=2; ... 95 1e-18
UniRef50_Q8WWY3 Cluster: U4/U6 small nuclear ribonucleoprotein P... 95 2e-18
UniRef50_Q5KLE9 Cluster: Putative uncharacterized protein; n=1; ... 87 5e-16
UniRef50_Q4PHP9 Cluster: Putative uncharacterized protein; n=1; ... 87 6e-16
UniRef50_O80740 Cluster: T13D8.6 protein; n=12; Magnoliophyta|Re... 83 7e-15
UniRef50_Q01E93 Cluster: PrpF31 U4/U6*U5 snRNP-associated pre-mR... 73 8e-12
UniRef50_Q54HA9 Cluster: Pre-mRNA processing factor 31; n=1; Dic... 73 1e-11
UniRef50_Q9M002 Cluster: Putative uncharacterized protein T4C21_... 71 3e-11
UniRef50_O42904 Cluster: Pre-mRNA-processing factor 31; n=1; Sch... 70 6e-11
UniRef50_Q0UMN0 Cluster: Predicted protein; n=15; Pezizomycotina... 69 2e-10
UniRef50_Q6CER2 Cluster: Similar to sp|O42904 Schizosaccharomyce... 64 5e-09
UniRef50_A0DG60 Cluster: Chromosome undetermined scaffold_5, who... 58 2e-07
UniRef50_A7AUH1 Cluster: Pre-mRNA processing ribonucleoprotein b... 58 2e-07
UniRef50_UPI0000499CF0 Cluster: pre-mRNA splicing factor; n=1; E... 56 1e-06
UniRef50_Q22Z37 Cluster: SnoRNA binding domain containing protei... 56 1e-06
UniRef50_Q9U0J5 Cluster: Pre-mrna splicing factor, putative; n=7... 53 7e-06
UniRef50_A5DLH7 Cluster: Putative uncharacterized protein; n=1; ... 53 7e-06
UniRef50_Q59JP6 Cluster: Potential U4/U6 snRNP-associated protei... 51 4e-05
UniRef50_Q4Q4L0 Cluster: Trans-splicing factor, putative; n=7; T... 48 2e-04
UniRef50_A3LVX9 Cluster: Splicing factor; n=3; Saccharomycetacea... 45 0.002
UniRef50_P49704 Cluster: Pre-mRNA-processing factor 31; n=2; Sac... 40 0.091
UniRef50_UPI0000DB73A5 Cluster: PREDICTED: similar to CG7457-PA;... 36 0.85
UniRef50_A1VVB9 Cluster: UvrD/REP helicase; n=1; Polaromonas nap... 36 1.5
UniRef50_Q9KDW0 Cluster: BH1101 protein; n=1; Bacillus haloduran... 34 4.5
UniRef50_Q6F1A8 Cluster: Putative uncharacterized protein; n=1; ... 34 4.5
UniRef50_Q7RMS2 Cluster: CCAAT-box DNA binding protein subunit B... 34 4.5
UniRef50_Q2HRG6 Cluster: RNA-binding region RNP-1; n=2; core eud... 33 6.0
UniRef50_Q674N9 Cluster: NADH dehydrogenase subunit 2; n=1; Tetr... 33 6.0
UniRef50_Q54N52 Cluster: Putative uncharacterized protein; n=1; ... 33 7.9
>UniRef50_Q9N592 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 504
Score = 95.5 bits (227), Expect = 1e-18
Identities = 45/112 (40%), Positives = 72/112 (64%)
Frame = +2
Query: 350 KEEYDFAVPYPVLPKEEEIKNVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLM 529
KEE D + + K S+ ++AKL SD ++ ++E +++V+V +
Sbjct: 34 KEELDDDIEEATEEPMDTTKYASVHDVAKLARSDEYLALVKQLEVELKRPQDEVKVTAPL 93
Query: 530 ESDPEYQLIVEANNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYI 685
E+DP+Y+LIV+ ++VA +ID EI +IH+FVRDKY+KRFPELE+L+ L Y+
Sbjct: 94 EADPQYKLIVKLSHVAADIDNEINVIHKFVRDKYEKRFPELETLVPNALTYL 145
>UniRef50_Q8WWY3 Cluster: U4/U6 small nuclear ribonucleoprotein
Prp31; n=42; Eumetazoa|Rep: U4/U6 small nuclear
ribonucleoprotein Prp31 - Homo sapiens (Human)
Length = 499
Score = 94.7 bits (225), Expect = 2e-18
Identities = 45/96 (46%), Positives = 64/96 (66%)
Frame = +2
Query: 401 EIKNVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQLIVEANNVAV 580
++ S++ +AKL S +M +IE EV G +E+ PEY++IV+ANN+ V
Sbjct: 42 DLSGDSVKTIAKLWDSKMFAEIMMKIEEYISKQAKASEVMGPVEAAPEYRVIVDANNLTV 101
Query: 581 EIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIR 688
EI+ E+ IIH+F+RDKY KRFPELESL+ L+YIR
Sbjct: 102 EIENELNIIHKFIRDKYSKRFPELESLVPNALDYIR 137
Score = 44.8 bits (101), Expect = 0.002
Identities = 21/28 (75%), Positives = 22/28 (78%)
Frame = +3
Query: 690 TVKELGNDLDRAKNNEILQSFLTXATIM 773
TVKELGN LD+ KNNE LQ LT ATIM
Sbjct: 138 TVKELGNSLDKCKNNENLQQILTNATIM 165
>UniRef50_Q5KLE9 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 553
Score = 87.0 bits (206), Expect = 5e-16
Identities = 46/109 (42%), Positives = 69/109 (63%), Gaps = 5/109 (4%)
Frame = +2
Query: 374 PYPVLPKEE----EIKNVS-IRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESD 538
P L KEE ++K V ++++A+L S +L+ V+++I + + AG +E +
Sbjct: 85 PADELDKEEVEKTDMKGVEDVKKVARLAGSQKLRDVLADIIKYTESPTDMSSSAGPLEEN 144
Query: 539 PEYQLIVEANNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYI 685
PEY L+V ANN++VE+D EI I+H+F+RD Y RFPELE LI P YI
Sbjct: 145 PEYHLVVTANNMSVEVDNEILIVHKFIRDHYAPRFPELEQLIAEPWTYI 193
>UniRef50_Q4PHP9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 561
Score = 86.6 bits (205), Expect = 6e-16
Identities = 40/92 (43%), Positives = 64/92 (69%), Gaps = 1/92 (1%)
Frame = +2
Query: 416 SIRELAKL-RYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQLIVEANNVAVEIDG 592
S+R +A L ++K+V+ +I+ + ++AG++E PEY LIV+ANNVAV++D
Sbjct: 90 SVRNVASLLENGSKVKQVLEQIDHFMA--LAEPDLAGVLEDSPEYHLIVKANNVAVDVDN 147
Query: 593 EIAIIHRFVRDKYQKRFPELESLIITPLEYIR 688
E+ ++H+F+RD Y RFPELESLI P +Y++
Sbjct: 148 EVMVVHKFIRDHYSPRFPELESLIPNPWDYVQ 179
>UniRef50_O80740 Cluster: T13D8.6 protein; n=12; Magnoliophyta|Rep:
T13D8.6 protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 511
Score = 83.0 bits (196), Expect = 7e-15
Identities = 36/95 (37%), Positives = 62/95 (65%)
Frame = +2
Query: 398 EEIKNVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQLIVEANNVA 577
E + + ++KL+ S R +M ++E G + + E ++E DPEY+LIV+ N ++
Sbjct: 70 ETLNYDDLDNVSKLQKSQRYADIMHKVEEALGKDSDGAEKGTVLEDDPEYKLIVDCNQLS 129
Query: 578 VEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEY 682
V+I+ EI I+H F++DKY+ +F ELESL+ P++Y
Sbjct: 130 VDIENEIVIVHNFIKDKYKLKFQELESLVHHPIDY 164
>UniRef50_Q01E93 Cluster: PrpF31 U4/U6*U5 snRNP-associated pre-mRNA
processing factor 31,; n=2; Ostreococcus|Rep: PrpF31
U4/U6*U5 snRNP-associated pre-mRNA processing factor 31,
- Ostreococcus tauri
Length = 505
Score = 72.9 bits (171), Expect = 8e-12
Identities = 34/96 (35%), Positives = 61/96 (63%), Gaps = 6/96 (6%)
Frame = +2
Query: 419 IRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVA------GLMESDPEYQLIVEANNVAV 580
+ +++ LR ++R + + S ++ N +E G ++ E L+++ N + V
Sbjct: 58 VDDVSTLRTTERYREITSAVDEALRKRENAMETTESGKALGAVDRGAE-ALVMKCNALTV 116
Query: 581 EIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIR 688
E+D EIAI+HRF++DKY+K+FPELESL++ P++Y R
Sbjct: 117 EVDNEIAIVHRFIKDKYKKKFPELESLVLHPIDYAR 152
>UniRef50_Q54HA9 Cluster: Pre-mRNA processing factor 31; n=1;
Dictyostelium discoideum AX4|Rep: Pre-mRNA processing
factor 31 - Dictyostelium discoideum AX4
Length = 1054
Score = 72.5 bits (170), Expect = 1e-11
Identities = 38/98 (38%), Positives = 62/98 (63%)
Frame = +2
Query: 407 KNVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQLIVEANNVAVEI 586
K+ I +AKL S++L +++ ++ + + V +S+ E++LIVE N +A EI
Sbjct: 620 KDAPIESIAKLNNSNKLTSLLTRVKNQMIKSLPEKGVKTGQDSE-EHKLIVECNQMAQEI 678
Query: 587 DGEIAIIHRFVRDKYQKRFPELESLIITPLEYIRDSER 700
EI +IH+FVR++Y K+FPELES + PL+YI +R
Sbjct: 679 QHEIYLIHKFVRERYSKKFPELESSVQNPLDYINCVKR 716
>UniRef50_Q9M002 Cluster: Putative uncharacterized protein T4C21_20;
n=1; Arabidopsis thaliana|Rep: Putative uncharacterized
protein T4C21_20 - Arabidopsis thaliana (Mouse-ear
cress)
Length = 442
Score = 70.9 bits (166), Expect = 3e-11
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Frame = +2
Query: 392 KEEEIKNVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVA-GLMESDPEYQLIVEAN 568
KEEE ++ + +L L Y D + + +KVE A G D EY+LIV+ N
Sbjct: 31 KEEEDVDMDMADLETLNYDDLDSVSKLQKTQRYDDIMHKVEEALGKDSDDHEYKLIVDCN 90
Query: 569 NVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEY 682
++V+I+ EI I+H F+++KY+ RF ELESL+ P++Y
Sbjct: 91 KLSVDIEDEIVIVHNFIKEKYKLRFQELESLVHHPIDY 128
>UniRef50_O42904 Cluster: Pre-mRNA-processing factor 31; n=1;
Schizosaccharomyces pombe|Rep: Pre-mRNA-processing
factor 31 - Schizosaccharomyces pombe (Fission yeast)
Length = 518
Score = 70.1 bits (164), Expect = 6e-11
Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Frame = +2
Query: 386 LPKEEEIK-NVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQLIVE 562
LP E K N + + +L S RL+ ++ E G K + G +E D EY LIV+
Sbjct: 65 LPSEVANKFNDNNENIYQLLNSTRLRDIIEGTEKYKGTE--KQAITGNIEDDLEYHLIVD 122
Query: 563 ANNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIR 688
+N++A+EID EI +HR V++ Y RFPEL SL++ +Y +
Sbjct: 123 SNSIAMEIDDEILRLHRLVKEWYHDRFPELSSLVLNAFDYCK 164
>UniRef50_Q0UMN0 Cluster: Predicted protein; n=15;
Pezizomycotina|Rep: Predicted protein - Phaeosphaeria
nodorum (Septoria nodorum)
Length = 560
Score = 68.5 bits (160), Expect = 2e-10
Identities = 27/52 (51%), Positives = 38/52 (73%)
Frame = +2
Query: 527 MESDPEYQLIVEANNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEY 682
+E PEYQL+ EAN + +IDGEI +H+F+RD+Y RFP LE L+ P++Y
Sbjct: 98 IEDTPEYQLLKEANEFSTQIDGEIQAVHKFIRDRYSARFPYLEELVKNPVDY 149
>UniRef50_Q6CER2 Cluster: Similar to sp|O42904 Schizosaccharomyces
pombe Pre-mRNA splicing factor prp31; n=1; Yarrowia
lipolytica|Rep: Similar to sp|O42904 Schizosaccharomyces
pombe Pre-mRNA splicing factor prp31 - Yarrowia
lipolytica (Candida lipolytica)
Length = 522
Score = 63.7 bits (148), Expect = 5e-09
Identities = 29/97 (29%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Frame = +2
Query: 404 IKNVSIRELAKLRYSDRLKRVMSEIEC----NAGNNRNKVEVAGLMESDPEYQLIVEANN 571
+ N+++ L + + R++ ++ +G ++ + + +E +PEY +IV AN
Sbjct: 50 LNNINLDLLGSTNSAAMVPRLLPQLRSISLYESGATQSTLALTSNLEENPEYHVIVGANE 109
Query: 572 VAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEY 682
+VEID +A +H F+ +Y +R+PEL SLI PL++
Sbjct: 110 YSVEIDNAVAELHNFIATRYSQRYPELRSLIANPLQH 146
>UniRef50_A0DG60 Cluster: Chromosome undetermined scaffold_5, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_5,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 463
Score = 58.4 bits (135), Expect = 2e-07
Identities = 25/52 (48%), Positives = 36/52 (69%)
Frame = +2
Query: 533 SDPEYQLIVEANNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIR 688
S EY LI+ +N + ID EI IH+ ++D Y K+FPELE +II P+EY++
Sbjct: 62 SHEEYHLILRSNEYSTIIDQEILNIHKQLKDVYHKKFPELEKIIINPIEYVK 113
>UniRef50_A7AUH1 Cluster: Pre-mRNA processing ribonucleoprotein
binding region-containing protein; n=3;
Piroplasmida|Rep: Pre-mRNA processing ribonucleoprotein
binding region-containing protein - Babesia bovis
Length = 483
Score = 58.0 bits (134), Expect = 2e-07
Identities = 27/51 (52%), Positives = 34/51 (66%)
Frame = +2
Query: 533 SDPEYQLIVEANNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYI 685
S E LI E N EID EI I+ +VRD Y KRFP+LES++ +PL+YI
Sbjct: 88 SHSELTLIEECNQAVQEIDNEIINIYNYVRDIYSKRFPKLESIVYSPLDYI 138
>UniRef50_UPI0000499CF0 Cluster: pre-mRNA splicing factor; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: pre-mRNA splicing
factor - Entamoeba histolytica HM-1:IMSS
Length = 453
Score = 56.0 bits (129), Expect = 1e-06
Identities = 26/94 (27%), Positives = 53/94 (56%)
Frame = +2
Query: 401 EIKNVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQLIVEANNVAV 580
++K SI ++ KL + + + + + + G+ K+ E DP+YQL+++ + +
Sbjct: 34 QLKPKSIEQIMKLEQWNEIIQQIEKYKEQQGDEIKKIN-----EEDPQYQLVIQIPEMLL 88
Query: 581 EIDGEIAIIHRFVRDKYQKRFPELESLIITPLEY 682
+I + I++ ++D Y K+FPELE L+ +EY
Sbjct: 89 QISNDEQILYNHIKDIYSKQFPELEQLVTNKVEY 122
>UniRef50_Q22Z37 Cluster: SnoRNA binding domain containing protein;
n=1; Tetrahymena thermophila SB210|Rep: SnoRNA binding
domain containing protein - Tetrahymena thermophila
SB210
Length = 540
Score = 55.6 bits (128), Expect = 1e-06
Identities = 22/63 (34%), Positives = 38/63 (60%)
Frame = +2
Query: 500 RNKVEVAGLMESDPEYQLIVEANNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLE 679
+ K V+ L D EY +I+ +N A I+ EI +H+F +D + KR EL+ ++I P++
Sbjct: 112 KGKQNVSNLTAQDDEYHVIIRSNEYAAIIEREIQAVHKFAKDIFLKRLAELQDIVINPID 171
Query: 680 YIR 688
Y +
Sbjct: 172 YAK 174
>UniRef50_Q9U0J5 Cluster: Pre-mrna splicing factor, putative; n=7;
Plasmodium|Rep: Pre-mrna splicing factor, putative -
Plasmodium falciparum (isolate 3D7)
Length = 566
Score = 53.2 bits (122), Expect = 7e-06
Identities = 29/99 (29%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Frame = +2
Query: 392 KEEEIKNVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQLIVE-AN 568
KE++ +NV E ++ ++ ++ I+ + NN N + E + +++E
Sbjct: 132 KEKDDENVDGDEEIEVLLKEKDSNKINNIDNDKFNNNNNNNNSSSDEDNFYDDVMIEKCM 191
Query: 569 NVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYI 685
++ID EI IH++V+D Y +FPEL+S++ +P+EYI
Sbjct: 192 ETILKIDTEILNIHKYVKDIYSTKFPELDSIVYSPVEYI 230
>UniRef50_A5DLH7 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 474
Score = 53.2 bits (122), Expect = 7e-06
Identities = 26/100 (26%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Frame = +2
Query: 392 KEEEIKNVSI-RELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQLIVEAN 568
++ +I+ SI +E+ + +L++++ + + + ES+ EYQ ++ N
Sbjct: 77 RQHDIQTKSITKEVPIFTFLPQLRQLLERFRGGSTDYMELLNSIEKPESNEEYQFVLAVN 136
Query: 569 NVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIR 688
++A I+ EI +H FV+ Y+ FPEL+SL+ + ++Y +
Sbjct: 137 DLATIINDEIRFLHSFVKHHYKLVFPELDSLVASAIDYAK 176
>UniRef50_Q59JP6 Cluster: Potential U4/U6 snRNP-associated protein
Prp31p; n=1; Candida albicans|Rep: Potential U4/U6
snRNP-associated protein Prp31p - Candida albicans
(Yeast)
Length = 249
Score = 50.8 bits (116), Expect = 4e-05
Identities = 30/104 (28%), Positives = 56/104 (53%)
Frame = +2
Query: 377 YPVLPKEEEIKNVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQLI 556
YP++P+ ++ I + + + D L+ + S N+ ++ + + E+ EY+ I
Sbjct: 86 YPLIPQLKQ----KIIQYSNEQELDYLELITSTTTTNSSSSSSSI-YDNYGENSQEYKFI 140
Query: 557 VEANNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIR 688
+ N ++ I+ EI H ++ KY FPELESLII ++YI+
Sbjct: 141 LLINELSTIINNEIERFHTLIKLKYNLIFPELESLIINKIDYIK 184
>UniRef50_Q4Q4L0 Cluster: Trans-splicing factor, putative; n=7;
Trypanosomatidae|Rep: Trans-splicing factor, putative -
Leishmania major
Length = 341
Score = 48.4 bits (110), Expect = 2e-04
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Frame = +2
Query: 383 VLPKEEEIKNVSIRELAKLRYSDRLK---RVMSEIECNAGNNRNKVEVAGLMESDPEYQL 553
+L ++ ++ S+ E+ KL S L R +S+ E G RN + DPEYQ
Sbjct: 27 LLSDDDALRYDSVTEVTKLLRSSYLSGMLRRLSDYEQTTGRGRNCIP-----SDDPEYQY 81
Query: 554 IVEANNVAVEIDGEIAIIHRFVRDKYQKRFPEL 652
+ + +++ + I+ E + +H F+R +Y RFPEL
Sbjct: 82 VSDCSSLVLRIEVEKSRVHVFLRAQYSIRFPEL 114
>UniRef50_A3LVX9 Cluster: Splicing factor; n=3;
Saccharomycetaceae|Rep: Splicing factor - Pichia
stipitis (Yeast)
Length = 544
Score = 44.8 bits (101), Expect = 0.002
Identities = 18/53 (33%), Positives = 34/53 (64%)
Frame = +2
Query: 530 ESDPEYQLIVEANNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIR 688
+ EY+ I+ N ++ I+ EI H+ ++ +Y+ FPELE+L++ P++Y R
Sbjct: 120 DQSEEYKFILLVNELSGIINQEIIAYHQLLKTQYKVVFPELETLVLNPIDYAR 172
>UniRef50_P49704 Cluster: Pre-mRNA-processing factor 31; n=2;
Saccharomyces cerevisiae|Rep: Pre-mRNA-processing factor
31 - Saccharomyces cerevisiae (Baker's yeast)
Length = 494
Score = 39.5 bits (88), Expect = 0.091
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +2
Query: 566 NNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEY 682
N + I I ++H F+ Y +RFPEL SLI +PL+Y
Sbjct: 99 NEIIPLIKSNIKLMHNFLISLYSRRFPELSSLIPSPLQY 137
>UniRef50_UPI0000DB73A5 Cluster: PREDICTED: similar to CG7457-PA;
n=3; Apis mellifera|Rep: PREDICTED: similar to CG7457-PA
- Apis mellifera
Length = 854
Score = 36.3 bits (80), Expect = 0.85
Identities = 25/87 (28%), Positives = 42/87 (48%)
Frame = +2
Query: 407 KNVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQLIVEANNVAVEI 586
++VS R + +S +KR S + N N + ++ L+ D EY +I E +N
Sbjct: 533 ESVSNRRYSDENFSSIMKRKSSNEDINDEQNLKRSKINDLIVKDNEYNMIQEDSN----- 587
Query: 587 DGEIAIIHRFVRDKYQKRFPELESLII 667
D +I I F +K QK+ ++ L I
Sbjct: 588 DYDIETIQNFSENKIQKKNQQISLLSI 614
>UniRef50_A1VVB9 Cluster: UvrD/REP helicase; n=1; Polaromonas
naphthalenivorans CJ2|Rep: UvrD/REP helicase -
Polaromonas naphthalenivorans (strain CJ2)
Length = 619
Score = 35.5 bits (78), Expect = 1.5
Identities = 14/56 (25%), Positives = 32/56 (57%)
Frame = +2
Query: 506 KVEVAGLMESDPEYQLIVEANNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITP 673
K+ VA L +S +++ + ++ +DG + ++ + DKY K+ E+ + ++TP
Sbjct: 439 KLLVAKLAKSFSDWKAFIRTGGSSMVVDGVVQLLGSYTEDKYSKKMLEIVAGVLTP 494
>UniRef50_Q9KDW0 Cluster: BH1101 protein; n=1; Bacillus
halodurans|Rep: BH1101 protein - Bacillus halodurans
Length = 389
Score = 33.9 bits (74), Expect = 4.5
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 383 VLPKEEEIKNVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQLIV 559
+L E + + EL + Y D R++S I G + + +A LME P +QL+V
Sbjct: 104 ILVAESLAEERGVAELLEFFYRDHEPRIISSIAVTEGKASDFLNIAPLMEMTPGHQLLV 162
>UniRef50_Q6F1A8 Cluster: Putative uncharacterized protein; n=1;
Mesoplasma florum|Rep: Putative uncharacterized protein
- Mesoplasma florum (Acholeplasma florum)
Length = 178
Score = 33.9 bits (74), Expect = 4.5
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = -2
Query: 314 RHFLLNQQVIRQLETCFCRTKLIF*VLSLCVSLFCFYCIL*YSTII-TVFYSNRLSQLYS 138
++F Q++I+Q F +KL++ L +SL F TII VF +N + + S
Sbjct: 27 KYFKQIQKLIKQDSRYFQNSKLLYICLGYLISLMIFSLAFVIITIICLVFITNIMLLVQS 86
Query: 137 IFHLVYIIDINLIF*SAMSLNFNSLY 60
I ++Y+I + +I+ + + + S+Y
Sbjct: 87 IICVIYMIML-IIWITLIQIKIKSIY 111
>UniRef50_Q7RMS2 Cluster: CCAAT-box DNA binding protein subunit B;
n=1; Plasmodium yoelii yoelii|Rep: CCAAT-box DNA binding
protein subunit B - Plasmodium yoelii yoelii
Length = 961
Score = 33.9 bits (74), Expect = 4.5
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = -3
Query: 685 YVFQWSDD*RFQFRKPFLIFVTDKSVN---NSYFTINFNSNIICFH 557
Y+ ++ DD ++ F P++ D S N NSY IN N+N I FH
Sbjct: 601 YIIRFIDDNKYVF--PYIFNTFDNSTNYELNSYDIINLNNNFIFFH 644
>UniRef50_Q2HRG6 Cluster: RNA-binding region RNP-1; n=2; core
eudicotyledons|Rep: RNA-binding region RNP-1 - Medicago
truncatula (Barrel medic)
Length = 200
Score = 33.5 bits (73), Expect = 6.0
Identities = 13/46 (28%), Positives = 29/46 (63%)
Frame = +2
Query: 500 RNKVEVAGLMESDPEYQLIVEANNVAVEIDGEIAIIHRFVRDKYQK 637
+ K++ L +SDP++++ +E N+ + EIA++HR + + +K
Sbjct: 111 KRKMKCCWLEQSDPDFEVAMELKNLTRKHSAEIALMHRVLLKEEEK 156
>UniRef50_Q674N9 Cluster: NADH dehydrogenase subunit 2; n=1;
Tetraleurodes acaciae|Rep: NADH dehydrogenase subunit 2
- Tetraleurodes acaciae (acacia whitefly)
Length = 324
Score = 33.5 bits (73), Expect = 6.0
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -1
Query: 231 FMCELVLFLLYSVIFY--NYYSFLLKSTFTAIQYISFSIHYRY*FDF 97
F C LVLF L+S+I+Y Y+ F++ S F++ Y+ Y + F F
Sbjct: 264 FFCILVLFSLFSLIYYFNIYFYFMIISFFSSKSYVFNFYCYIWSFSF 310
>UniRef50_Q54N52 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1677
Score = 33.1 bits (72), Expect = 7.9
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Frame = +2
Query: 392 KEEEIKNVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVE-VAGLMESDPEYQLIVEAN 568
K + I ++ + L+Y+ L ++ I N NN N ++ + + + + LI+
Sbjct: 594 KSKIIYSIPLHFHTNLKYNQLLNNWLNSINHNENNNLNNIKLILNNYKIEEKDNLIIIDK 653
Query: 569 NVAVEIDGEIAIIHRFVRDKYQKRFPEL--ESLIITPLEYIRDS 694
++ ++I E II R + K F E+ E LI I+DS
Sbjct: 654 DIIIKIKQESFIISRMILYLNSKEFSEIINEILIEISKLMIKDS 697
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 607,407,741
Number of Sequences: 1657284
Number of extensions: 10466220
Number of successful extensions: 30475
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30448
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65027411410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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