Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4f12
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    70   3e-13
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    28   1.7  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   3.0  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   6.9  

>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
 Frame = +2

Query: 386 LPKEEEIK-NVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQLIVE 562
           LP E   K N +   + +L  S RL+ ++   E   G    K  + G +E D EY LIV+
Sbjct: 65  LPSEVANKFNDNNENIYQLLNSTRLRDIIEGTEKYKGTE--KQAITGNIEDDLEYHLIVD 122

Query: 563 ANNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIR 688
           +N++A+EID EI  +HR V++ Y  RFPEL SL++   +Y +
Sbjct: 123 SNSIAMEIDDEILRLHRLVKEWYHDRFPELSSLVLNAFDYCK 164


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 317 HRHFLLNQQVIRQLETCFCRTKLIF*VLSLCVSLFCFYCIL 195
           H   LL + V R+LE   C   L   V+S C   FC  C++
Sbjct: 154 HMEDLLQENVSRELECQICFGMLYDPVVSPCGHTFCGPCLM 194


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -1

Query: 246 FLSVKFMCELVLFLLYSVIFYNYYS--FLLKSTFTAIQYISFSIHYRY*FDFLV 91
           F  + F+C     LLYS IF   ++  FL   T  + Q+    + Y +   F +
Sbjct: 18  FFRLFFVCSFFFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKLPYHHHHTFTI 71


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 737  FIILSPVQIIAKFFHC 690
            F  L+P++I  KFFHC
Sbjct: 956  FNSLTPIEIAKKFFHC 971


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,692
Number of Sequences: 5004
Number of extensions: 49714
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)