Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4f12
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0750 + 27763841-27763972,27764311-27764485,27764908-277649... 86 3e-17
07_01_0304 + 2177044-2177046,2177173-2177235,2177323-2177460,217... 81 1e-15
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 31 1.3
07_03_1027 - 23371826-23372006,23372110-23372171,23372595-233743... 29 4.1
05_06_0005 + 24802843-24803101,24804086-24804333,24804417-248045... 28 7.2
07_01_0451 - 3404749-3405171,3405444-3405599,3405711-3406583,340... 28 9.5
02_03_0351 + 18030656-18030823,18030963-18031113,18031214-180313... 28 9.5
>04_04_0750 +
27763841-27763972,27764311-27764485,27764908-27764998,
27764999-27765133,27765683-27765742,27765876-27765951,
27766037-27766174,27766509-27767373,27767763-27767865,
27768101-27768176,27768329-27768393,27768463-27768493,
27768618-27768725
Length = 684
Score = 86.2 bits (204), Expect = 3e-17
Identities = 39/101 (38%), Positives = 63/101 (62%)
Frame = +2
Query: 386 LPKEEEIKNVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQLIVEA 565
+P E + + ++KL+ + R +M ++E + ++E DPEYQLIV+
Sbjct: 241 MPDLESLNYDDLDSVSKLQKTQRYNDIMQKVENALQKGTDFSNQRSILEEDPEYQLIVDC 300
Query: 566 NNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIR 688
N ++V+I+ EI IIH F+RDKY+ +FPELESL+ P++Y R
Sbjct: 301 NALSVDIENEIIIIHNFIRDKYRLKFPELESLVHHPIDYAR 341
>07_01_0304 +
2177044-2177046,2177173-2177235,2177323-2177460,
2177886-2178778,2178935-2179005,2179132-2179234,
2180017-2180092,2180870-2180977
Length = 484
Score = 80.6 bits (190), Expect = 1e-15
Identities = 37/97 (38%), Positives = 60/97 (61%)
Frame = +2
Query: 398 EEIKNVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQLIVEANNVA 577
E + + ++KL+ + +M ++E + ++E DPEYQLIV+ N ++
Sbjct: 44 ESLNYDDLDSVSKLQKTQCYNDIMQKVEDALQKGTDFSNQGSILEEDPEYQLIVDFNALS 103
Query: 578 VEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIR 688
V+I+ EI IIH F+RDKY+ +FPELESL+ P++Y R
Sbjct: 104 VDIENEIIIIHNFIRDKYRLKFPELESLVHHPIDYAR 140
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = +2
Query: 395 EEEIKNV--SIRELAKLRYSDRLKR-VMSEIECNAGNNRNKVEVAGLMESDPEYQLIVEA 565
+E+++N+ L K S RL+ ++S+ EC + ++ +ES+PEYQ +V
Sbjct: 3254 DEDLQNMMEEYSSLEKANSSPRLRIFLVSQTECEDSSLDSRS-----LESEPEYQFVVAV 3308
Query: 566 NNVA 577
NN+A
Sbjct: 3309 NNLA 3312
>07_03_1027 -
23371826-23372006,23372110-23372171,23372595-23374335,
23374609-23374704,23374967-23375043,23376807-23377307
Length = 885
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 425 ELAKLRYSDRLKRVMSEIECNAGNNRNKVEV-AGLMESDPEYQLIVEANNVAVE 583
E A+LR S R+K + E C+ +NK+ V +S P Y I++A NV E
Sbjct: 727 EAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNVYSE 780
>05_06_0005 +
24802843-24803101,24804086-24804333,24804417-24804572,
24804956-24805114,24805862-24805929,24806044-24806433,
24806515-24806563,24806636-24806788,24807416-24807589,
24808207-24808362,24808705-24808756,24808830-24808988,
24809058-24809094,24809218-24809252,24809349-24809400,
24809614-24809663,24810590-24811924,24812688-24812825,
24812907-24812957,24813081-24814237
Length = 1625
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 350 KEEYDFAVPYPVLPKEEEIKNVSIRELAKLRYSDRLK 460
+ E +P+ + KEEE+ + E K RYS R+K
Sbjct: 101 RTERSHPLPFLGIVKEEELSGDELEEFIKDRYSSRVK 137
>07_01_0451 -
3404749-3405171,3405444-3405599,3405711-3406583,
3406847-3406942
Length = 515
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 434 KLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQL 553
KL + ++RV + ++ + G K+EV GL+E++ Y +
Sbjct: 90 KLNAEEFIRRVDAILQQHNGGGVEKIEVIGLLENENAYHI 129
>02_03_0351 +
18030656-18030823,18030963-18031113,18031214-18031309,
18032027-18032103,18032627-18032706,18033216-18033276,
18034153-18034220,18034312-18034393,18034552-18034638,
18035009-18035086,18035336-18035455,18035554-18035730
Length = 414
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 174 CNNCRILQNTIETEQAHT*T*HSENQFSSTEACL 275
C +C +L ++E QAH + N STEA L
Sbjct: 8 CGDCGVLLRSVEEAQAHAEATNHANFSESTEAVL 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,198,062
Number of Sequences: 37544
Number of extensions: 245901
Number of successful extensions: 580
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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