Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4f12
         (774 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117389-1|AAI17390.1|  499|Homo sapiens PRP31 pre-mRNA processi...    95   3e-19
AY040822-1|AAK77986.1|  499|Homo sapiens U4/U6 snRNP-associated ...    95   3e-19
AK098547-1|BAC05329.1|  364|Homo sapiens protein ( Homo sapiens ...    95   3e-19
AF308303-1|AAG48270.1|  278|Homo sapiens serologically defined b...    81   3e-15
DQ374434-1|ABD37635.1|   38|Homo sapiens truncated pre-mRNA spli...    39   0.017
AK128544-1|BAC87493.1|  170|Homo sapiens protein ( Homo sapiens ...    31   4.6  

>BC117389-1|AAI17390.1|  499|Homo sapiens PRP31 pre-mRNA processing
           factor 31 homolog (S. cerevisiae) protein.
          Length = 499

 Score = 94.7 bits (225), Expect = 3e-19
 Identities = 45/96 (46%), Positives = 64/96 (66%)
 Frame = +2

Query: 401 EIKNVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQLIVEANNVAV 580
           ++   S++ +AKL  S     +M +IE          EV G +E+ PEY++IV+ANN+ V
Sbjct: 42  DLSGDSVKTIAKLWDSKMFAEIMMKIEEYISKQAKASEVMGPVEAAPEYRVIVDANNLTV 101

Query: 581 EIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIR 688
           EI+ E+ IIH+F+RDKY KRFPELESL+   L+YIR
Sbjct: 102 EIENELNIIHKFIRDKYSKRFPELESLVPNALDYIR 137



 Score = 44.8 bits (101), Expect = 3e-04
 Identities = 21/28 (75%), Positives = 22/28 (78%)
 Frame = +3

Query: 690 TVKELGNDLDRAKNNEILQSFLTXATIM 773
           TVKELGN LD+ KNNE LQ  LT ATIM
Sbjct: 138 TVKELGNSLDKCKNNENLQQILTNATIM 165


>AY040822-1|AAK77986.1|  499|Homo sapiens U4/U6 snRNP-associated 61
           kDa protein protein.
          Length = 499

 Score = 94.7 bits (225), Expect = 3e-19
 Identities = 45/96 (46%), Positives = 64/96 (66%)
 Frame = +2

Query: 401 EIKNVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQLIVEANNVAV 580
           ++   S++ +AKL  S     +M +IE          EV G +E+ PEY++IV+ANN+ V
Sbjct: 42  DLSGDSVKTIAKLWDSKMFAEIMMKIEEYISKQAKASEVMGPVEAAPEYRVIVDANNLTV 101

Query: 581 EIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIR 688
           EI+ E+ IIH+F+RDKY KRFPELESL+   L+YIR
Sbjct: 102 EIENELNIIHKFIRDKYSKRFPELESLVPNALDYIR 137



 Score = 44.8 bits (101), Expect = 3e-04
 Identities = 21/28 (75%), Positives = 22/28 (78%)
 Frame = +3

Query: 690 TVKELGNDLDRAKNNEILQSFLTXATIM 773
           TVKELGN LD+ KNNE LQ  LT ATIM
Sbjct: 138 TVKELGNSLDKCKNNENLQQILTNATIM 165


>AK098547-1|BAC05329.1|  364|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25681 fis, clone TST04131. ).
          Length = 364

 Score = 94.7 bits (225), Expect = 3e-19
 Identities = 45/96 (46%), Positives = 64/96 (66%)
 Frame = +2

Query: 401 EIKNVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQLIVEANNVAV 580
           ++   S++ +AKL  S     +M +IE          EV G +E+ PEY++IV+ANN+ V
Sbjct: 42  DLSGDSVKTIAKLWDSKMFAEIMMKIEEYISKQAKASEVMGPVEAAPEYRVIVDANNLTV 101

Query: 581 EIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIR 688
           EI+ E+ IIH+F+RDKY KRFPELESL+   L+YIR
Sbjct: 102 EIENELNIIHKFIRDKYSKRFPELESLVPNALDYIR 137



 Score = 44.8 bits (101), Expect = 3e-04
 Identities = 21/28 (75%), Positives = 22/28 (78%)
 Frame = +3

Query: 690 TVKELGNDLDRAKNNEILQSFLTXATIM 773
           TVKELGN LD+ KNNE LQ  LT ATIM
Sbjct: 138 TVKELGNSLDKCKNNENLQQILTNATIM 165


>AF308303-1|AAG48270.1|  278|Homo sapiens serologically defined
           breast cancer antigen NY-BR-99 protein.
          Length = 278

 Score = 81.4 bits (192), Expect = 3e-15
 Identities = 35/56 (62%), Positives = 47/56 (83%)
 Frame = +2

Query: 521 GLMESDPEYQLIVEANNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIR 688
           G +E+ PEY++IV+ANN+ VEI+ E+ IIH+F+RDKY KRFPELESL+   L+YIR
Sbjct: 2   GPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIR 57



 Score = 44.8 bits (101), Expect = 3e-04
 Identities = 21/28 (75%), Positives = 22/28 (78%)
 Frame = +3

Query: 690 TVKELGNDLDRAKNNEILQSFLTXATIM 773
           TVKELGN LD+ KNNE LQ  LT ATIM
Sbjct: 58  TVKELGNSLDKCKNNENLQQILTNATIM 85


>DQ374434-1|ABD37635.1|   38|Homo sapiens truncated pre-mRNA
           splicing factor protein protein.
          Length = 38

 Score = 39.1 bits (87), Expect = 0.017
 Identities = 18/25 (72%), Positives = 19/25 (76%)
 Frame = +3

Query: 699 ELGNDLDRAKNNEILQSFLTXATIM 773
           ELGN LD+ KNNE LQ  LT ATIM
Sbjct: 1   ELGNSLDKCKNNENLQQILTNATIM 25


>AK128544-1|BAC87493.1|  170|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46703 fis, clone TRACH3014580. ).
          Length = 170

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = -3

Query: 772 IIVAXVRKLCNISLFLALSKSLPSSF 695
           ++VA VR  C  SLFL LS+ LPSS+
Sbjct: 1   MMVALVRICCRFSLFLHLSRLLPSSW 26


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,070,399
Number of Sequences: 237096
Number of extensions: 1499165
Number of successful extensions: 2910
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2910
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)