Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4f12
(774 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical... 95 4e-20
AF047658-3|ABC71828.1| 315|Caenorhabditis elegans Hypothetical ... 30 2.1
AF045644-2|AAC02600.1| 454|Caenorhabditis elegans Hypothetical ... 29 2.8
Z98853-4|CAB57905.1| 301|Caenorhabditis elegans Hypothetical pr... 28 6.4
U18384-1|AAA62504.1| 293|Caenorhabditis elegans collagen protein. 28 6.4
Z71258-12|CAJ30220.1| 555|Caenorhabditis elegans Hypothetical p... 28 8.5
Z71258-11|CAJ30219.1| 361|Caenorhabditis elegans Hypothetical p... 28 8.5
Z71258-10|CAJ30218.1| 439|Caenorhabditis elegans Hypothetical p... 28 8.5
Z71258-9|CAI46548.1| 437|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z71258-8|CAD30427.1| 553|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z71258-7|CAA95782.2| 588|Caenorhabditis elegans Hypothetical pr... 28 8.5
U51136-1|AAA96057.1| 553|Caenorhabditis elegans CHR3 protein. 28 8.5
U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resis... 28 8.5
U13075-1|AAA96983.1| 553|Caenorhabditis elegans steroid hormone... 28 8.5
AF332203-1|AAK17974.1| 588|Caenorhabditis elegans nuclear recep... 28 8.5
AF332202-1|AAK17973.1| 573|Caenorhabditis elegans nuclear recep... 28 8.5
>AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical
protein Y110A7A.8 protein.
Length = 504
Score = 95.5 bits (227), Expect = 4e-20
Identities = 45/112 (40%), Positives = 72/112 (64%)
Frame = +2
Query: 350 KEEYDFAVPYPVLPKEEEIKNVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLM 529
KEE D + + K S+ ++AKL SD ++ ++E +++V+V +
Sbjct: 34 KEELDDDIEEATEEPMDTTKYASVHDVAKLARSDEYLALVKQLEVELKRPQDEVKVTAPL 93
Query: 530 ESDPEYQLIVEANNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYI 685
E+DP+Y+LIV+ ++VA +ID EI +IH+FVRDKY+KRFPELE+L+ L Y+
Sbjct: 94 EADPQYKLIVKLSHVAADIDNEINVIHKFVRDKYEKRFPELETLVPNALTYL 145
>AF047658-3|ABC71828.1| 315|Caenorhabditis elegans Hypothetical
protein K03H6.4 protein.
Length = 315
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -3
Query: 691 VPYVFQWSDD*RFQFRKPFLIFVTDKSVNNSYFTINFNSNIICFH 557
VP +F RF++RK FL+F S++ Y + ++ H
Sbjct: 24 VPLIFNLLSQKRFRYRKDFLLFACASSIDMFYVVVTIWNSACRLH 68
>AF045644-2|AAC02600.1| 454|Caenorhabditis elegans Hypothetical
protein F57H12.4 protein.
Length = 454
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = -3
Query: 625 VTDKSVNNSYFTINFNSNIICFHNQLILRVRLH*ASNFNLISVISSITFYFTHNTFQTI 449
+ +K + NS+ I +++ +Q I+ V L S F+++ + SSI Y + + TI
Sbjct: 59 ILEKRIYNSFLKIRLLNSVFLLKHQTIMMVLLCGLSLFDVVLLTSSIMIYPSMHQCSTI 117
>Z98853-4|CAB57905.1| 301|Caenorhabditis elegans Hypothetical
protein R08A2.4 protein.
Length = 301
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +2
Query: 542 EYQ-LIVEANNVAVEIDGEIAIIHRFVRD-KYQKRFPELESLIITPLEYIR 688
+YQ +++ ++ E DG+I I V K ++RF ++E++ I+ LEY++
Sbjct: 107 KYQRALLQRFSINFESDGDIKIFEELVHILKAKRRFLQVETIDISLLEYLQ 157
>U18384-1|AAA62504.1| 293|Caenorhabditis elegans collagen protein.
Length = 293
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = -2
Query: 299 NQQVIRQLETCFCRTKLIF*VLSLCVSLFCFYCIL*YSTIITVFY 165
+Q++++ ++ F ++ L+ ++S C+ L CF C++ T I Y
Sbjct: 226 HQELLQDIKRNFSKSLLLI-LVSYCIVLKCFKCLIFQGTSINDIY 269
>Z71258-12|CAJ30220.1| 555|Caenorhabditis elegans Hypothetical
protein C01H6.5f protein.
Length = 555
Score = 27.9 bits (59), Expect = 8.5
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +2
Query: 386 LPKEEEIKNV--SIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLM-ESDPEYQLI 556
LP+E +I+ + S+ EL+ L ++ V ++ C R V A L+ E D E QLI
Sbjct: 381 LPQETQIQLLKGSVFELS-LVFAAMYYNVDAQAVCG---ERYSVPFACLIAEDDAEMQLI 436
Query: 557 VEANNVAVEI 586
VE NN EI
Sbjct: 437 VEVNNTLQEI 446
>Z71258-11|CAJ30219.1| 361|Caenorhabditis elegans Hypothetical
protein C01H6.5e protein.
Length = 361
Score = 27.9 bits (59), Expect = 8.5
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +2
Query: 386 LPKEEEIKNV--SIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLM-ESDPEYQLI 556
LP+E +I+ + S+ EL+ L ++ V ++ C R V A L+ E D E QLI
Sbjct: 187 LPQETQIQLLKGSVFELS-LVFAAMYYNVDAQAVCG---ERYSVPFACLIAEDDAEMQLI 242
Query: 557 VEANNVAVEI 586
VE NN EI
Sbjct: 243 VEVNNTLQEI 252
>Z71258-10|CAJ30218.1| 439|Caenorhabditis elegans Hypothetical
protein C01H6.5d protein.
Length = 439
Score = 27.9 bits (59), Expect = 8.5
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +2
Query: 386 LPKEEEIKNV--SIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLM-ESDPEYQLI 556
LP+E +I+ + S+ EL+ L ++ V ++ C R V A L+ E D E QLI
Sbjct: 265 LPQETQIQLLKGSVFELS-LVFAAMYYNVDAQAVCG---ERYSVPFACLIAEDDAEMQLI 320
Query: 557 VEANNVAVEI 586
VE NN EI
Sbjct: 321 VEVNNTLQEI 330
>Z71258-9|CAI46548.1| 437|Caenorhabditis elegans Hypothetical
protein C01H6.5c protein.
Length = 437
Score = 27.9 bits (59), Expect = 8.5
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +2
Query: 386 LPKEEEIKNV--SIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLM-ESDPEYQLI 556
LP+E +I+ + S+ EL+ L ++ V ++ C R V A L+ E D E QLI
Sbjct: 263 LPQETQIQLLKGSVFELS-LVFAAMYYNVDAQAVCG---ERYSVPFACLIAEDDAEMQLI 318
Query: 557 VEANNVAVEI 586
VE NN EI
Sbjct: 319 VEVNNTLQEI 328
>Z71258-8|CAD30427.1| 553|Caenorhabditis elegans Hypothetical
protein C01H6.5b protein.
Length = 553
Score = 27.9 bits (59), Expect = 8.5
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +2
Query: 386 LPKEEEIKNV--SIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLM-ESDPEYQLI 556
LP+E +I+ + S+ EL+ L ++ V ++ C R V A L+ E D E QLI
Sbjct: 379 LPQETQIQLLKGSVFELS-LVFAAMYYNVDAQAVCG---ERYSVPFACLIAEDDAEMQLI 434
Query: 557 VEANNVAVEI 586
VE NN EI
Sbjct: 435 VEVNNTLQEI 444
>Z71258-7|CAA95782.2| 588|Caenorhabditis elegans Hypothetical
protein C01H6.5a protein.
Length = 588
Score = 27.9 bits (59), Expect = 8.5
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +2
Query: 386 LPKEEEIKNV--SIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLM-ESDPEYQLI 556
LP+E +I+ + S+ EL+ L ++ V ++ C R V A L+ E D E QLI
Sbjct: 414 LPQETQIQLLKGSVFELS-LVFAAMYYNVDAQAVCG---ERYSVPFACLIAEDDAEMQLI 469
Query: 557 VEANNVAVEI 586
VE NN EI
Sbjct: 470 VEVNNTLQEI 479
>U51136-1|AAA96057.1| 553|Caenorhabditis elegans CHR3 protein.
Length = 553
Score = 27.9 bits (59), Expect = 8.5
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +2
Query: 386 LPKEEEIKNV--SIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLM-ESDPEYQLI 556
LP+E +I+ + S+ EL+ L ++ V ++ C R V A L+ E D E QLI
Sbjct: 379 LPQETQIQLLKGSVFELS-LVFAAMYYNVDAQAVCG---ERYSVPFACLIAEDDAEMQLI 434
Query: 557 VEANNVAVEI 586
VE NN EI
Sbjct: 435 VEVNNTLQEI 444
>U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug
resistance protein familyprotein 6 protein.
Length = 1396
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 246 FLSVKFMCELVLFLLYSVIFYNYYSFLLKSTFTAIQYI-SFSIHYRY 109
F ++C L++F Y+ I ++ + F F + I SF +HY Y
Sbjct: 220 FAHYVWLCPLLMFF-YAYILWSMFGFCCLLGFLVMMAIVSFQVHYSY 265
>U13075-1|AAA96983.1| 553|Caenorhabditis elegans steroid hormone
receptor familymember CHR3 protein.
Length = 553
Score = 27.9 bits (59), Expect = 8.5
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +2
Query: 386 LPKEEEIKNV--SIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLM-ESDPEYQLI 556
LP+E +I+ + S+ EL+ L ++ V ++ C R V A L+ E D E QLI
Sbjct: 379 LPQETQIQLLKGSVFELS-LVFAAMYYNVDAQAVCG---ERYSVPFACLIAEDDAEMQLI 434
Query: 557 VEANNVAVEI 586
VE NN EI
Sbjct: 435 VEVNNTLQEI 444
>AF332203-1|AAK17974.1| 588|Caenorhabditis elegans nuclear receptor
NHR-23 protein.
Length = 588
Score = 27.9 bits (59), Expect = 8.5
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +2
Query: 386 LPKEEEIKNV--SIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLM-ESDPEYQLI 556
LP+E +I+ + S+ EL+ L ++ V ++ C R V A L+ E D E QLI
Sbjct: 414 LPQETQIQLLKGSVFELS-LVFAAMYYNVDAQAVCG---ERYSVPFACLIAEDDAEMQLI 469
Query: 557 VEANNVAVEI 586
VE NN EI
Sbjct: 470 VEVNNTLQEI 479
>AF332202-1|AAK17973.1| 573|Caenorhabditis elegans nuclear receptor
NHR-23 protein.
Length = 573
Score = 27.9 bits (59), Expect = 8.5
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +2
Query: 386 LPKEEEIKNV--SIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLM-ESDPEYQLI 556
LP+E +I+ + S+ EL+ L ++ V ++ C R V A L+ E D E QLI
Sbjct: 399 LPQETQIQLLKGSVFELS-LVFAAMYYNVDAQAVCG---ERYSVPFACLIAEDDAEMQLI 454
Query: 557 VEANNVAVEI 586
VE NN EI
Sbjct: 455 VEVNNTLQEI 464
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,683,252
Number of Sequences: 27780
Number of extensions: 268417
Number of successful extensions: 798
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -