Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4f07
         (224 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q80TK0 Cluster: MKIAA1107 protein; n=13; Murinae|Rep: M...    33   1.2  
UniRef50_A3BSN3 Cluster: Putative uncharacterized protein; n=4; ...    31   3.8  
UniRef50_A4QP83 Cluster: LOC100005466 protein; n=2; Danio rerio|...    31   5.0  
UniRef50_UPI00004982FA Cluster: Der1 family protein; n=1; Entamo...    31   6.6  

>UniRef50_Q80TK0 Cluster: MKIAA1107 protein; n=13; Murinae|Rep:
           MKIAA1107 protein - Mus musculus (Mouse)
          Length = 1236

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +3

Query: 51  KMTVCSMNGCHSTSEKHKKDSNITFHGFPSYHRSDNCSENTFRCYKAT 194
           K  +C   G  ST    + D  +TFHG       DNC+    +C   T
Sbjct: 593 KAFLCVPEGTSSTLNPTQSDRRLTFHGAAQSQLPDNCATEDSKCATVT 640


>UniRef50_A3BSN3 Cluster: Putative uncharacterized protein; n=4;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 723

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 72  NGCHSTSEKHKKDSNITFHGFPSYHRSDNCSENTFRCY 185
           NG   T   +  DSN+   GF +Y  S N + +TF  Y
Sbjct: 216 NGLRETFTTYGNDSNVIASGFTNYGESGNGATDTFTAY 253


>UniRef50_A4QP83 Cluster: LOC100005466 protein; n=2; Danio
           rerio|Rep: LOC100005466 protein - Danio rerio
           (Zebrafish) (Brachydanio rerio)
          Length = 619

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 48  LKMT-VCSMNGCHSTSEKHKKDSNITFHGFP 137
           LKM   C+  GC +   K  KD  ITFH FP
Sbjct: 10  LKMPDFCAAYGCSNERTKKLKDKGITFHRFP 40


>UniRef50_UPI00004982FA Cluster: Der1 family protein; n=1; Entamoeba
           histolytica HM-1:IMSS|Rep: Der1 family protein -
           Entamoeba histolytica HM-1:IMSS
          Length = 254

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 114 YYLSCVFPMYYDIRSLNKPSFL 49
           Y+L  VFPMYY+ + L  P FL
Sbjct: 186 YWLETVFPMYYNWKPLELPKFL 207


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,959,128
Number of Sequences: 1657284
Number of extensions: 3115535
Number of successful extensions: 7827
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7827
length of database: 575,637,011
effective HSP length: 53
effective length of database: 487,800,959
effective search space used: 10243820139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)