Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4f07
         (224 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    25   1.3  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    25   1.8  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   1.8  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    24   3.1  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    23   4.1  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    23   5.4  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    23   7.2  
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    23   7.2  

>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 117 CYYLSCVFPMYYDIRSLNKPSFLIK-FSGVLFNTTRP 10
           C YLS   P +  + SLN P+  ++    V  +TT P
Sbjct: 249 CIYLSMPIPKFCTVESLNVPNRKLRVVCDVSCDTTNP 285


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +3

Query: 123 FHGFPSYHRSDNCSENTFRCYKATEINN 206
           ++  PSY   +N  +N  RCY+  ++ +
Sbjct: 19  WNDLPSYGEDENVPQNIRRCYQLLDMTS 46


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +3

Query: 63  CSMNGCHSTSEKHKKDSNITFHGFPSYHRSDNCSENT 173
           C ++  HS    H   S+    G   Y+ + NC+ N+
Sbjct: 567 CGLDSIHSVRFFHAIQSHFHLEGPIRYNMNSNCTPNS 603


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 45  LLKMTVCSMNGCHSTSEKHKKDSNITFHGFP 137
           LLK    SM G  S  +K K++ NIT  G P
Sbjct: 293 LLKQRQSSMGGKVSAKKKQKQNLNIT-KGLP 322


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 79  HPFIEQTVIFNKIFGSTFQYDTSLST 2
           HP I    IF+K   ST  +  +LS+
Sbjct: 118 HPCIRSNPIFDKFIHSTVSWHVTLSS 143


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 161 TIVASMIGRKPVKCNVTIFLV 99
           T +A +  RKP   N TIFL+
Sbjct: 95  TFLAELSVRKPTDVNFTIFLL 115


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = -3

Query: 165 LNNCRFDDRKETREM*CYYLSCVFPMYYDIRSLNKPSFLIK 43
           L N  + DR+++ +    YL      YY +   N P  +++
Sbjct: 208 LANLVYIDRRQSSQQITDYLDLSLQTYYSLDKSNVPDTILR 248


>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 114 NITFHGFPSYHRSDNCSENTFRCYKA 191
           NI   G P YH+  N S    R Y+A
Sbjct: 191 NIITPGAPEYHKYVNMSPEERRGYQA 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 870,711
Number of Sequences: 5004
Number of extensions: 15048
Number of successful extensions: 38
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)