Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4f07
         (224 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0505 + 17897038-17898870,17899049-17899108,17900034-179001...    31   0.095
04_04_0723 - 27572697-27572793,27572842-27572903,27573229-27573414     27   2.7  
05_06_0032 - 25067996-25068156,25068746-25068815,25069385-250695...    26   4.7  
11_06_0057 + 19683226-19684055,19685742-19687824                       25   8.2  
10_01_0089 + 1103841-1104152,1104809-1104946,1105527-1105631,110...    25   8.2  
01_05_0540 + 23069954-23070103,23070170-23070251,23070298-230703...    25   8.2  

>08_02_0505 +
           17897038-17898870,17899049-17899108,17900034-17900150,
           17900352-17900389,17900446-17900641
          Length = 747

 Score = 31.5 bits (68), Expect = 0.095
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 72  NGCHSTSEKHKKDSNITFHGFPSYHRSDNCSENTFRCY 185
           NG   T   +  DSN+   GF +Y  S N + +TF  Y
Sbjct: 240 NGLRETFTTYGNDSNVIASGFTNYGESGNGATDTFTAY 277



 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 66  SMNGCHSTSEKHKKDSNITFHGFPSYHRSDNCSENTFRCYKA 191
           S NG   T   + K+ N+  + F SY    N   +TF+ Y++
Sbjct: 266 SGNGATDTFTAYGKEGNVPDNTFRSYGAGGNAGVDTFKGYRS 307


>04_04_0723 - 27572697-27572793,27572842-27572903,27573229-27573414
          Length = 114

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 78  CHSTSEKHKKDSNITFHGFPSYHRSDNCSEN 170
           C +T   HKK ++   H   + HR+DN ++N
Sbjct: 60  CQNTMPIHKKFTDNNIHIHRAAHRTDNNTDN 90


>05_06_0032 -
           25067996-25068156,25068746-25068815,25069385-25069532,
           25069611-25069726,25069799-25069877,25069960-25070030,
           25070139-25070348,25070445-25070453,25070824-25070968,
           25071297-25071332,25071428-25071494,25071591-25071624
          Length = 381

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
 Frame = +3

Query: 78  CHSTSEKHKKDSNITFHGFP--SYHRSDNCSENTFRCYKATEIN 203
           C   S +H     I  HGFP  ++ RS +   N  R     E+N
Sbjct: 108 CSGLSNQHTMTPEIAVHGFPADNFTRSGSRGINLSRLSLGVELN 151


>11_06_0057 + 19683226-19684055,19685742-19687824
          Length = 970

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 54  MTVCSMNGCHSTSEKHKKDSNITFH 128
           + V ++ GC    + H KD +I FH
Sbjct: 579 LRVLNLEGCLGLCDNHLKDISILFH 603


>10_01_0089 +
           1103841-1104152,1104809-1104946,1105527-1105631,
           1106403-1106577,1107124-1107398,1108222-1108391,
           1108508-1109084
          Length = 583

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 136 GNP*NVMLLSFLCFSDVL*HPFIEQT 59
           G P N M+ S   F DV+ HP  E T
Sbjct: 437 GEPCNKMIASRDLFEDVIRHPSFEDT 462


>01_05_0540 +
           23069954-23070103,23070170-23070251,23070298-23070355,
           23071276-23071318,23072262-23073341,23073448-23073509,
           23073759-23073855,23074703-23074984,23075073-23075147,
           23075223-23075276,23075373-23075515,23076567-23076858
          Length = 805

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 79  VIVHRKNTRKIVTLHFTGFLPIIEATIVQKTLSV 180
           +I + ++   IV LH  G  PI +AT++   LS+
Sbjct: 525 LIAYHESGHAIVALHTQGAHPIHQATVLPHGLSL 558


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,910,834
Number of Sequences: 37544
Number of extensions: 77984
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)