Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4f06
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 62 5e-11
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 52 5e-08
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 45 1e-05
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 35 0.011
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 31 0.10
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 31 0.18
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 29 0.42
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 29 0.55
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 27 1.7
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 27 2.2
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 26 3.9
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 26 3.9
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 26 3.9
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 26 3.9
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 26 5.1
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 25 6.8
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 6.8
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 25 6.8
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 25 9.0
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 62.5 bits (145), Expect = 5e-11
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 14/95 (14%)
Frame = +3
Query: 123 CEHLLDNVKLEQIKVEDTKITK--NFSCSECSVPEQNWLCLHCGVVNCGRYV------NG 278
C+H+++ + +T +T N +CS+C + E W+CL CG ++CGR NG
Sbjct: 153 CDHIIN------LPENETYVTNLDNATCSKCDLAENLWMCLTCGALSCGRKQYGGGGGNG 206
Query: 279 HAKNHADTLGHQLCISCDAYS------VYCYKCDD 365
HA +H D GH L + + S +YCY CD+
Sbjct: 207 HALSHYDDTGHPLAVKLKSISPDGQADIYCYSCDE 241
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 52.4 bits (120), Expect = 5e-08
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +3
Query: 198 CSECSVPEQNWLCLHCGVVNCGRYVNGHAKNHADTLGHQLCISCDAYSVYCYKCDDYI 371
C+ C + W+CL CG + CGRY + HAK H H + + V+ Y D+Y+
Sbjct: 262 CTVCCYDKDLWICLICGNIGCGRYHDAHAKQHYVDTAHCYAMELETQRVWDYAGDNYV 319
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 44.8 bits (101), Expect = 1e-05
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Frame = +3
Query: 120 ECEHLLDNVKLEQIK-----VEDTKITKNFSCSECSVPEQNW---LCLHCGVVNCGRYVN 275
EC HL VKL +K + D F C+ + +++ LC +CG + C + +
Sbjct: 55 ECSHLKKGVKLSHLKGNARALRDPSKHLCFICTTEKIKREDYELTLCANCGYLFCCNHES 114
Query: 276 GHAKNHAD-TLGHQLCISCDAYSVYCYKCD-DYIINDTEN 389
H++ H + H + ++ +CY CD D +I D +N
Sbjct: 115 DHSRKHFEKNKKHCVFVNIITLKCHCYSCDADIVIFDKKN 154
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 34.7 bits (76), Expect = 0.011
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 198 CSECS-VPEQNWLCLHCGVVNCGRYVNGHAKNHADTLGHQLCISCDAYSVYCYKCDDYI 371
CS C + +++ CL C V C H + HA H + + YC+ C DY+
Sbjct: 38 CSTCKRINKRSIRCLSCHSVGC--LWGHHGEEHAMEHTHMIGVDVKNGHTYCFGCQDYV 94
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 31.5 bits (68), Expect = 0.10
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +3
Query: 207 CSVPEQN---WLCLHCGVVNCGRYVNGHAKNHADTLGHQLCISCDAYSVY 347
CSV N + CL CG GR + HA HA T H + ++C Y
Sbjct: 77 CSVSLTNLSVYACLVCGRYFQGRGPSSHAYFHALTENHHVFVNCSTLKFY 126
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 30.7 bits (66), Expect = 0.18
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 425 NPYNTLPYFIYIVLSIIYNVIITFVTIYRISITANAKLVS 306
NP + +F Y +S+ Y V+ T V +Y+I IT N + S
Sbjct: 296 NPAGWMTFFYYFAISLAYMVLHTLVLLYQI-ITLNVTVNS 334
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 29.5 bits (63), Expect = 0.42
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Frame = -1
Query: 524 SDQTRYIGIT-VIFILSAIFLLFSTVLFFIILLPN-PYNTLPYFIYIVLSIIYNVIITFV 351
SDQ + I T +I + I + LF+ LPN PY+ FIY V S I + +
Sbjct: 95 SDQLQLIKNTSLISVYIGIVISLLVSLFYFYSLPNFPYSKTCIFIYTVSSFIELLSEPYY 154
Query: 350 TI----YRISITANAKLVSECVSMVLRMAIYI 267
+ + S TA+A+ + + +L AI +
Sbjct: 155 EVLQWRQKFSKTASAEGLGTIICSLLSFAISV 186
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 29.1 bits (62), Expect = 0.55
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 265 RPQFTTPQCRQSQFCSGTEHSEQLKFFVIFVSSTLICSNLTLSN 134
RP F + ++S G+ HS Q F F S L N+ + N
Sbjct: 159 RPSFASLLTKKSSSHQGSSHSSQPSLFTTFTSLELFLRNVLVHN 202
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 138 DNVKLEQIKVEDTKITKNFSCSECSVPEQNWLCLHCGVVNCGRYVNGH 281
D +K++ +K + IT+ C C+ P QN L L+C CG ++ H
Sbjct: 860 DILKIDTLKSFEALITECPIC--CNEPIQNPLLLNCKHACCGDCLSEH 905
>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 581
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/57 (22%), Positives = 31/57 (54%)
Frame = -1
Query: 473 IFLLFSTVLFFIILLPNPYNTLPYFIYIVLSIIYNVIITFVTIYRISITANAKLVSE 303
+F +F T+ + ++ + T+ F+Y++L+ I + TF+T + + L+S+
Sbjct: 409 LFSIFCTIAAYYLVSSSTKITVFIFLYLMLTFIGIIFSTFMTSEDAELVLSYDLMSK 465
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 438 DEKQNSREKQEDSRQDEDDCDANIP-GLVTAPDDIVLNVIEGD 563
+ + NS +KQ+ S DED D + G A + ++ ++G+
Sbjct: 175 EHRSNSNDKQKSSDNDEDPNDTTVGIGAALAASILSVDSVDGE 217
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 360 DDYIINDTENNIDKXXXXXXXXXXXNDEKQNSREKQED-SRQDEDDCDAN 506
DD++ +DT + D + S E+ ED ++E+D D N
Sbjct: 212 DDHVYDDTNDGTDDDINNNEYKDDESSSGSESYERDEDVDEEEEEDDDEN 261
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 331 SQLMQSWCPSVSAWFFAWP 275
S ++SW P + AWF A+P
Sbjct: 450 SMQLRSWGPIIGAWFGAFP 468
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = -2
Query: 214 TEHSEQLKFFVIFVSSTLICSNLTLSNKCSHSI 116
TEHS ++ F++ + S L+ ++ +C +S+
Sbjct: 85 TEHSSRISFYICYFSIFLLFFAISFQAECYYSL 117
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 437 ILLPNPYNTLPYFIYIVLSIIYNVIITFVTIY 342
I+LPN Y T P + +V +I N + + Y
Sbjct: 225 IILPNYYETSPLVLSLVTEVIINTTLLPLVSY 256
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 509 YIGITVIFILSAIFLLFSTVLFFIILLPNPY 417
++G +I IL IFL F+ +L +PNPY
Sbjct: 2 FLGKAIILILW-IFLAFTGLLAIQYYVPNPY 31
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.4 bits (53), Expect = 6.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 569 CYISFNNIEHYIIWSSDQTRY 507
CY+ F + EH + W D +Y
Sbjct: 555 CYVFFGSNEHLMNWLKDLVKY 575
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 540 VLNVIEGDIAVQPTSSSLDPHS 605
VL+++EG + V+ T + DP+S
Sbjct: 85 VLDLVEGSMTVKTTRKTFDPYS 106
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 9.0
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -2
Query: 262 PQFTTPQCRQSQFCSGTEHSEQLKFFVIFVSSTLICSNLTLSNKCSHSILHSTEKLSEI 86
P T P+C + T + F + +T ICSN + KCS + S K+S++
Sbjct: 343 PNGTIPECPSR---NKTSWAVSANAFPV-TPNTTICSNAVKNLKCSANGTPSGSKISQV 397
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,370,681
Number of Sequences: 5004
Number of extensions: 46745
Number of successful extensions: 213
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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