Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4f06
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.46 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   1.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 294 HGSSHGHLHNDHSSPHHN 241
           H   HGH H  H++PHH+
Sbjct: 417 HTMGHGHSH-IHATPHHH 433


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
 Frame = +3

Query: 258 CGRYVNGHAKN------HADT--LGHQLCISCDAYSVYCYKCDDYIINDTENNIDKXXXX 413
           CGRY N +A N      +AD     +Q   + +A      + +D   ND + N ++    
Sbjct: 419 CGRYHNQNAGNQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDN 478

Query: 414 XXXXXXXNDEKQNSREKQEDSRQDEDDCDAN 506
                  ND KQN   +Q  ++Q+++  + N
Sbjct: 479 KQNGNRQNDNKQNG-NRQNGNKQNDNKQNGN 508


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 440 IILLPNPYNTLPYFIYIVLSIIYN 369
           + +LP+PYNT  +F Y +   +Y+
Sbjct: 235 VYILPDPYNT-KFFRYRITPELYS 257


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 527 SSDQTRYIGITVIFILSAIFLLFSTVLFFIILLPNPYN 414
           + D+   + +T IFI + +  L   +LF+  LL +  N
Sbjct: 212 TDDEDTKVFVTCIFIWAYVIPLIFIILFYSRLLSSIRN 249


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 473 IFLLFSTVLFFIILLPNPYNTLPYFIYIVLSIIY 372
           I L  +T+L F+ L     N+LP   YI  S I+
Sbjct: 264 IVLGTNTILTFMTLASKVENSLPKVSYIKASEIW 297


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 527 SSDQTRYIGITVIFILSAIFLLFSTVLFFIILLPNPYN 414
           + D+   + +T IFI + +  L   +LF+  LL +  N
Sbjct: 212 TDDEDTKVFVTCIFIWAYVIPLIFIILFYSRLLSSIRN 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,435
Number of Sequences: 438
Number of extensions: 3169
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)