Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4f03
(710 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U44772-1|AAB06236.1| 306|Homo sapiens palmitoyl protein thioest... 163 7e-40
L42809-1|AAA85337.1| 306|Homo sapiens palmitoyl-protein thioest... 163 7e-40
CR542053-1|CAG46850.1| 306|Homo sapiens PPT1 protein. 163 7e-40
BC008426-1|AAH08426.1| 306|Homo sapiens palmitoyl-protein thioe... 163 7e-40
AL512599-16|CAI11026.1| 279|Homo sapiens palmitoyl-protein thio... 163 7e-40
AL512599-15|CAI11025.1| 306|Homo sapiens palmitoyl-protein thio... 163 7e-40
AF022211-1|AAB72224.1| 306|Homo sapiens palmitoyl-protein thioe... 163 7e-40
AL512599-14|CAI11024.1| 177|Homo sapiens palmitoyl-protein thio... 83 7e-16
AK223413-1|BAD97133.1| 534|Homo sapiens polymerase (RNA) III (D... 30 9.4
>U44772-1|AAB06236.1| 306|Homo sapiens palmitoyl protein
thioesterase protein.
Length = 306
Score = 163 bits (395), Expect = 7e-40
Identities = 72/135 (53%), Positives = 94/135 (69%)
Frame = +2
Query: 224 GDTCCMSFSLGSFKIFLEKNIPGVYVLSLQIGNNTVEDFENGYFMNPNLQVEYVCEKLAA 403
GD+CC S+G+ K +EK IPG+YVLSL+IG +ED EN +F+N N QV VC+ LA
Sbjct: 42 GDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGKTLMEDVENSFFLNVNSQVTTVCQALAK 101
Query: 404 DPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHET 583
DPKL G+N MGFSQG QF+RAV QRC P + N++S+GGQHQG++G+P C
Sbjct: 102 DPKLQQGYNAMGFSQGGQFLRAVAQRC--PSPPMINLISVGGQHQGVFGLPRCPGESSHI 159
Query: 584 CDDVRKLLNYAAYNR 628
CD +RK LN AY++
Sbjct: 160 CDFIRKTLNAGAYSK 174
>L42809-1|AAA85337.1| 306|Homo sapiens palmitoyl-protein
thioesterase protein.
Length = 306
Score = 163 bits (395), Expect = 7e-40
Identities = 72/135 (53%), Positives = 94/135 (69%)
Frame = +2
Query: 224 GDTCCMSFSLGSFKIFLEKNIPGVYVLSLQIGNNTVEDFENGYFMNPNLQVEYVCEKLAA 403
GD+CC S+G+ K +EK IPG+YVLSL+IG +ED EN +F+N N QV VC+ LA
Sbjct: 42 GDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGKTLMEDVENSFFLNVNSQVTTVCQALAK 101
Query: 404 DPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHET 583
DPKL G+N MGFSQG QF+RAV QRC P + N++S+GGQHQG++G+P C
Sbjct: 102 DPKLQQGYNAMGFSQGGQFLRAVAQRC--PSPPMINLISVGGQHQGVFGLPRCPGESSHI 159
Query: 584 CDDVRKLLNYAAYNR 628
CD +RK LN AY++
Sbjct: 160 CDFIRKTLNAGAYSK 174
>CR542053-1|CAG46850.1| 306|Homo sapiens PPT1 protein.
Length = 306
Score = 163 bits (395), Expect = 7e-40
Identities = 72/135 (53%), Positives = 94/135 (69%)
Frame = +2
Query: 224 GDTCCMSFSLGSFKIFLEKNIPGVYVLSLQIGNNTVEDFENGYFMNPNLQVEYVCEKLAA 403
GD+CC S+G+ K +EK IPG+YVLSL+IG +ED EN +F+N N QV VC+ LA
Sbjct: 42 GDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGKTLMEDVENSFFLNVNSQVTTVCQALAK 101
Query: 404 DPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHET 583
DPKL G+N MGFSQG QF+RAV QRC P + N++S+GGQHQG++G+P C
Sbjct: 102 DPKLQQGYNAMGFSQGGQFLRAVAQRC--PSPPMINLISVGGQHQGVFGLPRCPGESSHI 159
Query: 584 CDDVRKLLNYAAYNR 628
CD +RK LN AY++
Sbjct: 160 CDFIRKTLNAGAYSK 174
>BC008426-1|AAH08426.1| 306|Homo sapiens palmitoyl-protein
thioesterase 1 (ceroid-lipofuscinosis, neuronal 1,
infantile) protein.
Length = 306
Score = 163 bits (395), Expect = 7e-40
Identities = 72/135 (53%), Positives = 94/135 (69%)
Frame = +2
Query: 224 GDTCCMSFSLGSFKIFLEKNIPGVYVLSLQIGNNTVEDFENGYFMNPNLQVEYVCEKLAA 403
GD+CC S+G+ K +EK IPG+YVLSL+IG +ED EN +F+N N QV VC+ LA
Sbjct: 42 GDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGKTLMEDVENSFFLNVNSQVTTVCQALAK 101
Query: 404 DPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHET 583
DPKL G+N MGFSQG QF+RAV QRC P + N++S+GGQHQG++G+P C
Sbjct: 102 DPKLQQGYNAMGFSQGGQFLRAVAQRC--PSPPMINLISVGGQHQGVFGLPRCPGESSHI 159
Query: 584 CDDVRKLLNYAAYNR 628
CD +RK LN AY++
Sbjct: 160 CDFIRKTLNAGAYSK 174
>AL512599-16|CAI11026.1| 279|Homo sapiens palmitoyl-protein
thioesterase 1 (ceroid-lipofuscinosis, neuronal 1,
infantile) protein.
Length = 279
Score = 163 bits (395), Expect = 7e-40
Identities = 72/135 (53%), Positives = 94/135 (69%)
Frame = +2
Query: 224 GDTCCMSFSLGSFKIFLEKNIPGVYVLSLQIGNNTVEDFENGYFMNPNLQVEYVCEKLAA 403
GD+CC S+G+ K +EK IPG+YVLSL+IG +ED EN +F+N N QV VC+ LA
Sbjct: 71 GDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGKTLMEDVENSFFLNVNSQVTTVCQALAK 130
Query: 404 DPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHET 583
DPKL G+N MGFSQG QF+RAV QRC P + N++S+GGQHQG++G+P C
Sbjct: 131 DPKLQQGYNAMGFSQGGQFLRAVAQRC--PSPPMINLISVGGQHQGVFGLPRCPGESSHI 188
Query: 584 CDDVRKLLNYAAYNR 628
CD +RK LN AY++
Sbjct: 189 CDFIRKTLNAGAYSK 203
>AL512599-15|CAI11025.1| 306|Homo sapiens palmitoyl-protein
thioesterase 1 (ceroid-lipofuscinosis, neuronal 1,
infantile) protein.
Length = 306
Score = 163 bits (395), Expect = 7e-40
Identities = 72/135 (53%), Positives = 94/135 (69%)
Frame = +2
Query: 224 GDTCCMSFSLGSFKIFLEKNIPGVYVLSLQIGNNTVEDFENGYFMNPNLQVEYVCEKLAA 403
GD+CC S+G+ K +EK IPG+YVLSL+IG +ED EN +F+N N QV VC+ LA
Sbjct: 42 GDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGKTLMEDVENSFFLNVNSQVTTVCQALAK 101
Query: 404 DPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHET 583
DPKL G+N MGFSQG QF+RAV QRC P + N++S+GGQHQG++G+P C
Sbjct: 102 DPKLQQGYNAMGFSQGGQFLRAVAQRC--PSPPMINLISVGGQHQGVFGLPRCPGESSHI 159
Query: 584 CDDVRKLLNYAAYNR 628
CD +RK LN AY++
Sbjct: 160 CDFIRKTLNAGAYSK 174
>AF022211-1|AAB72224.1| 306|Homo sapiens palmitoyl-protein
thioesterase protein.
Length = 306
Score = 163 bits (395), Expect = 7e-40
Identities = 72/135 (53%), Positives = 94/135 (69%)
Frame = +2
Query: 224 GDTCCMSFSLGSFKIFLEKNIPGVYVLSLQIGNNTVEDFENGYFMNPNLQVEYVCEKLAA 403
GD+CC S+G+ K +EK IPG+YVLSL+IG +ED EN +F+N N QV VC+ LA
Sbjct: 42 GDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGKTLMEDVENSFFLNVNSQVTTVCQALAK 101
Query: 404 DPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHET 583
DPKL G+N MGFSQG QF+RAV QRC P + N++S+GGQHQG++G+P C
Sbjct: 102 DPKLQQGYNAMGFSQGGQFLRAVAQRC--PSPPMINLISVGGQHQGVFGLPRCPGESSHI 159
Query: 584 CDDVRKLLNYAAYNR 628
CD +RK LN AY++
Sbjct: 160 CDFIRKTLNAGAYSK 174
>AL512599-14|CAI11024.1| 177|Homo sapiens palmitoyl-protein
thioesterase 1 (ceroid-lipofuscinosis, neuronal 1,
infantile) protein.
Length = 177
Score = 83.4 bits (197), Expect = 7e-16
Identities = 36/69 (52%), Positives = 48/69 (69%)
Frame = +2
Query: 422 GFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETCDDVRK 601
G+N MGFSQG QF+RAV QRC P + N++S+GGQHQG++G+P C CD +RK
Sbjct: 3 GYNAMGFSQGGQFLRAVAQRCPS--PPMINLISVGGQHQGVFGLPRCPGESSHICDFIRK 60
Query: 602 LLNYAAYNR 628
LN AY++
Sbjct: 61 TLNAGAYSK 69
>AK223413-1|BAD97133.1| 534|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide C (62kD) variant protein.
Length = 534
Score = 29.9 bits (64), Expect = 9.4
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 449 GCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGI-YGIPHCGALRHET-CDDVRKLLNYAAY 622
G Q +R + G L Q+K + + QH + Y + G + +E C V ++L Y Y
Sbjct: 32 GSQPLRVIAHDTGTSLDQVKKALCVLAQHNLVSYQVHKRGVVEYEAQCSRVLRMLRYPRY 91
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,553,323
Number of Sequences: 237096
Number of extensions: 2349828
Number of successful extensions: 3825
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3816
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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