Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4f03
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50313-5|AAA92329.1|  270|Caenorhabditis elegans Palmitoyl prote...   145   3e-35
AY691522-1|AAU01161.1|  254|Caenorhabditis elegans palmitoyl pro...   145   3e-35
Z93778-3|CAB07846.1|  446|Caenorhabditis elegans Hypothetical pr...    32   0.35 
AF099925-2|AAC69505.1|  265|Caenorhabditis elegans Hypothetical ...    28   5.7  

>U50313-5|AAA92329.1|  270|Caenorhabditis elegans Palmitoyl protein
           thioesteraseprotein 1 protein.
          Length = 270

 Score =  145 bits (351), Expect = 3e-35
 Identities = 67/136 (49%), Positives = 93/136 (68%)
 Frame = +2

Query: 224 GDTCCMSFSLGSFKIFLEKNIPGVYVLSLQIGNNTVEDFENGYFMNPNLQVEYVCEKLAA 403
           GD CC   S+GS K   E+ IPGVYV SLQ+G++  +D E+G++ N N  V   C K+  
Sbjct: 6   GDCCCNPLSMGSVKKLFEEQIPGVYVHSLQLGSSITKDIEHGFYANTNELVYMACIKIKN 65

Query: 404 DPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHET 583
           DP+L NG+N +GFSQG QF+RAV QRC +  P +KN+VS+GGQHQG++G P+C    +  
Sbjct: 66  DPELKNGYNAIGFSQGAQFLRAVAQRCPN--PPMKNLVSVGGQHQGVFGAPYCIG-DNIM 122

Query: 584 CDDVRKLLNYAAYNRF 631
           C+ VR+L++  AY  F
Sbjct: 123 CNGVRRLIDLGAYLPF 138


>AY691522-1|AAU01161.1|  254|Caenorhabditis elegans palmitoyl
           protein thioesterase protein.
          Length = 254

 Score =  145 bits (351), Expect = 3e-35
 Identities = 67/136 (49%), Positives = 93/136 (68%)
 Frame = +2

Query: 224 GDTCCMSFSLGSFKIFLEKNIPGVYVLSLQIGNNTVEDFENGYFMNPNLQVEYVCEKLAA 403
           GD CC   S+GS K   E+ IPGVYV SLQ+G++  +D E+G++ N N  V   C K+  
Sbjct: 6   GDCCCNPLSMGSVKKLFEEQIPGVYVHSLQLGSSITKDIEHGFYANTNELVYMACIKIKN 65

Query: 404 DPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHET 583
           DP+L NG+N +GFSQG QF+RAV QRC +  P +KN+VS+GGQHQG++G P+C    +  
Sbjct: 66  DPELKNGYNAIGFSQGAQFLRAVAQRCPN--PPMKNLVSVGGQHQGVFGAPYCIG-DNIM 122

Query: 584 CDDVRKLLNYAAYNRF 631
           C+ VR+L++  AY  F
Sbjct: 123 CNGVRRLIDLGAYLPF 138


>Z93778-3|CAB07846.1|  446|Caenorhabditis elegans Hypothetical
           protein C31H5.6 protein.
          Length = 446

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +2

Query: 365 NLQVEYVCEKLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQH 535
           ++ VEY  + +     LS   N++G  QG  F   +V     + PQIK +VS+ G H
Sbjct: 211 DVDVEYFLKPIEFVLGLSYTTNMLGI-QGVSFGATIVDLLSTRYPQIKAVVSINGPH 266


>AF099925-2|AAC69505.1|  265|Caenorhabditis elegans Hypothetical
           protein K01A2.5 protein.
          Length = 265

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
 Frame = +2

Query: 425 FNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETCDDVRKL 604
           F VMG+S+G    R  V        ++  M+ + G  +    + H GA+  +   +    
Sbjct: 101 FTVMGWSEGA---RTTVHVAAKGKEKVNRMIVMAGATK----VNHLGAMAFKGMRETNHW 153

Query: 605 L---NYAAYNRFELDSIRSKWESLWD*IDFFYSF 697
           L        + +  +++R++W +L D +D  +SF
Sbjct: 154 LAAGRQPYLDHYSPETLRTQWAALCDVVDQVHSF 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,206,760
Number of Sequences: 27780
Number of extensions: 389654
Number of successful extensions: 852
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)