Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4f01
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    50   3e-07
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ...    31   0.13 
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    30   0.30 
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    30   0.39 
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    28   1.2  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    28   1.6  
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch...    27   2.8  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   3.7  
SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ...    26   4.8  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    26   4.8  

>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 24/59 (40%), Positives = 40/59 (67%), Gaps = 4/59 (6%)
 Frame = +1

Query: 493 LVFDEAKRKDFLCGFRKRKLERKKKAQEDLQRLLKEE----KRRIKQENKRILQKTSCF 657
           +VFD+ KRK++L GF KRK+ER+K AQ  L++  +EE    ++ ++++ KR L +   F
Sbjct: 27  IVFDKEKRKEYLTGFHKRKVERRKHAQVQLEQQKREERLALRKSLREQRKRELAERLAF 85


>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 144

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +1

Query: 532 GFRKRKLERKKKAQEDLQRLLKEEKRRIKQENK 630
           G RKRK  +K   QE  +R   EEKRRI+QE +
Sbjct: 64  GERKRKFSKKSHLQELYER--SEEKRRIQQEKE 94


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 11/33 (33%), Positives = 25/33 (75%)
 Frame = +1

Query: 544 RKLERKKKAQEDLQRLLKEEKRRIKQENKRILQ 642
           +K+  +K+A+E+ ++ ++EE+ RI +E KR+ +
Sbjct: 251 QKMLEEKRAREEEEQRIREEEARIAEEEKRLAE 283


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 17/42 (40%), Positives = 27/42 (64%)
 Frame = +1

Query: 505 EAKRKDFLCGFRKRKLERKKKAQEDLQRLLKEEKRRIKQENK 630
           EAKR++     +KR+ +R K+ QE  Q+ L+ +KR  KQ+ K
Sbjct: 630 EAKRQEE--ARKKREEQRLKREQEKKQQELERQKREEKQKQK 669



 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/31 (25%), Positives = 23/31 (74%)
 Frame = +1

Query: 553 ERKKKAQEDLQRLLKEEKRRIKQENKRILQK 645
           E K+K + +L+++ ++EK+R K++  ++ ++
Sbjct: 579 ENKRKQERELKKIREKEKKRDKKKQLKLAKE 609


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 496 VFDEAKRKDFLCGFRKRKLERKKKAQEDLQRLLKEEKRRIKQENKRILQK 645
           V D  +RKD     RKR  +RKK+  E+  +   EE  R+K   ++ L++
Sbjct: 361 VADSLRRKD---DSRKRARDRKKERLEEASQKRLEEVNRLKNLKRKELEE 407


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/36 (33%), Positives = 26/36 (72%)
 Frame = +1

Query: 538 RKRKLERKKKAQEDLQRLLKEEKRRIKQENKRILQK 645
           RK++L  K+K +++  RL++E+K + + E +R+ Q+
Sbjct: 137 RKKELMEKEKKEKERIRLIEEQKHK-ENEQRRLKQE 171



 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 544 RKLERKKKAQEDLQRLLKEEKRRIKQ 621
           R+L  KK+ + + QRL  EE+RR K+
Sbjct: 115 RELLEKKRIEAERQRLKDEEERRKKE 140


>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 520 DFLCGFRKRKLERKKKAQEDLQRLLKEEKRRIKQENKRILQKTSCFQ 660
           DF   F KR++E + +  E   R L E K  + +E  R  ++   FQ
Sbjct: 35  DFRVEFEKRRIEARNRILESEGRAL-ENKTHLNEEEIRTNERVKRFQ 80


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +1

Query: 496 VFDEAKRKDFLCGFRKRKLE----RKKKAQEDLQRLLKEEKRRIKQENKRILQ 642
           + D  + KD LC  + RKLE      K ++E LQ + K  +   K+     LQ
Sbjct: 470 LMDRVQNKDLLCQEQARKLEVLDLNVKSSREQLQYVSKSNQEHKKEVEALQLQ 522


>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 502 DEAKRKDFLCGFRKRKLERKKKAQEDLQRLLKEEKRRIKQ 621
           D    KDF   +R +  E+KKKA  DL    + +K+RI+Q
Sbjct: 208 DTGIHKDF---YRFQLREKKKKALLDLAHKFEFDKQRIQQ 244


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 502 DEAKRKDFLCGFRKRKLERKKKAQEDLQRLLKEEKRRIKQENK 630
           +E K++D      +   E++KK Q++  R  +E K+R K + K
Sbjct: 323 EEIKQQDNFHEQSRALKEKRKKEQDENVRRKRENKKRRKDQKK 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,550
Number of Sequences: 5004
Number of extensions: 42255
Number of successful extensions: 150
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)