Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4f01
(735 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1022 + 13260647-13260834,13260965-13261070,13262052-132621... 44 1e-04
11_01_0701 - 5774234-5774404,5774456-5774456,5774558-5774763,577... 33 0.24
04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990... 31 0.95
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 31 1.3
04_01_0261 + 3516461-3516629,3517729-3517823,3518724-3518834,351... 29 2.9
04_01_0027 - 360909-360926,361588-361644,361765-361854,361953-36... 29 2.9
02_04_0446 - 22995503-22995655,22995775-22995912 29 2.9
02_04_0103 - 19768288-19768737 29 2.9
06_01_1159 - 9852316-9852441,9852743-9852838,9852912-9852977,985... 29 5.1
01_07_0118 + 41176159-41178909 29 5.1
01_06_1554 + 38217297-38217539,38217783-38218352,38218439-38219008 29 5.1
12_02_0035 - 12563503-12564405,12564494-12565611,12565709-125662... 28 8.8
>03_02_1022 +
13260647-13260834,13260965-13261070,13262052-13262169,
13262271-13262539
Length = 226
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = +1
Query: 502 DEAKRKDFLCGFRKRKLERKKKAQEDLQRLLKEEKRRIKQENKRILQK 645
D+ KDF+ GF KRK +R+K+AQ+ LQ KE K+RI++ +R +K
Sbjct: 58 DKKALKDFVTGFHKRKKKRRKEAQKILQE--KERKKRIEERKRRKQEK 103
>11_01_0701 -
5774234-5774404,5774456-5774456,5774558-5774763,
5775157-5775303,5775423-5775628,5776391-5776580
Length = 306
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 538 RKRKLERKKKAQEDLQRLLKEEKRRIKQENKR 633
+K K RKK+ + +R LK EK+R+K+E KR
Sbjct: 267 KKLKKARKKRLKRAEKRRLKREKKRLKREEKR 298
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/29 (44%), Positives = 23/29 (79%)
Frame = +1
Query: 550 LERKKKAQEDLQRLLKEEKRRIKQENKRI 636
+++ KKA++ +RL + EKRR+K+E KR+
Sbjct: 266 MKKLKKARK--KRLKRAEKRRLKREKKRL 292
>04_04_0596 -
26497863-26497913,26498010-26498081,26499015-26499093,
26499440-26499553,26499822-26499871,26500353-26500398,
26501100-26501719
Length = 343
Score = 31.1 bits (67), Expect = 0.95
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +1
Query: 538 RKRKLERKKKAQE-DLQRLLKEEKRRIKQENKRILQKTSCFQS 663
RK K RK+K +E + +R KE+K+R K+E K + +K + S
Sbjct: 152 RKDKERRKRKEKERERERKKKEKKKRRKEEKKNLGKKAAVTNS 194
>05_07_0329 -
29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/31 (41%), Positives = 24/31 (77%)
Frame = +1
Query: 538 RKRKLERKKKAQEDLQRLLKEEKRRIKQENK 630
R+++ E +KK +E+ +RL KEE+ R+K+E +
Sbjct: 434 RRQEAEERKKREEE-ERLRKEEEERLKKEEE 463
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +1
Query: 538 RKRKLERKKKAQEDLQRLLKEEKRRIKQENKR 633
RK++ E ++ +E+ +RL KEE+ R +E KR
Sbjct: 441 RKKREEEERLRKEEEERLKKEEEERKAEEAKR 472
>04_01_0261 +
3516461-3516629,3517729-3517823,3518724-3518834,
3519179-3519213,3519864-3519954,3520124-3520196,
3521127-3521257,3524325-3524720
Length = 366
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = +1
Query: 511 KRKDFLCGFRKRKLERK---KKAQEDLQRLLKEEKRRIKQ 621
KR + L RK K +++ KK +EDL+R +++ K IKQ
Sbjct: 319 KRNEDLAKLRKEKEDQQVDFKKEKEDLEREIRQLKEEIKQ 358
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/51 (25%), Positives = 30/51 (58%)
Frame = +1
Query: 511 KRKDFLCGFRKRKLERKKKAQEDLQRLLKEEKRRIKQENKRILQKTSCFQS 663
K+ + L R L + KK +ED+++ ++ + RIK+ ++++ +S +S
Sbjct: 195 KKYENLTKKRNEDLAKLKKEKEDMEKEIRGLRERIKELEEQVISSSSSGKS 245
>04_01_0027 -
360909-360926,361588-361644,361765-361854,361953-362038,
362159-362219,362310-362480,362555-362701,362773-362910
Length = 255
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 541 KRKLERKKKAQEDLQRLLKEEKRRIKQENK-RILQKT 648
+R+LER A+E +R ++EE R +QE + R++ T
Sbjct: 66 RRRLERDSDAREAFERQVREEHERRRQEREARVIPDT 102
>02_04_0446 - 22995503-22995655,22995775-22995912
Length = 96
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 626 IKESYKKLVVSSRPLPDIEQLLKEEYEDDDAD 721
I+++ LV+ +P D+++ E EDDDAD
Sbjct: 50 IRKTNSNLVIIGKPTGDVKEEYDAEAEDDDAD 81
>02_04_0103 - 19768288-19768737
Length = 149
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/32 (37%), Positives = 24/32 (75%)
Frame = +1
Query: 538 RKRKLERKKKAQEDLQRLLKEEKRRIKQENKR 633
RKRK +RKKK ++ ++ K++K++ K++ K+
Sbjct: 106 RKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKK 137
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/32 (34%), Positives = 24/32 (75%)
Frame = +1
Query: 538 RKRKLERKKKAQEDLQRLLKEEKRRIKQENKR 633
RKRK ++KKK ++ ++ K++K++ K++ K+
Sbjct: 108 RKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKK 139
>06_01_1159 -
9852316-9852441,9852743-9852838,9852912-9852977,
9853091-9853180,9853262-9853373,9853515-9853598,
9853864-9853940,9854823-9854873,9854924-9855031,
9855703-9855774,9856952-9857011,9857808-9857876,
9858005-9858088,9858212-9858295,9859106-9859198,
9859930-9860030,9861155-9861264,9863058-9863104,
9863693-9863778,9863940-9864012,9864454-9864540,
9864650-9865301,9866164-9867182,9867702-9867797
Length = 1180
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 538 RKRKLERKKKAQEDLQRLLKEEKRRIKQENKRILQKTSCFQS 663
RK RKK+A ED +KEEK K++ K + T+ +S
Sbjct: 185 RKSPTSRKKEASED----MKEEKASTKKQRKSVKTSTAATKS 222
>01_07_0118 + 41176159-41178909
Length = 916
Score = 28.7 bits (61), Expect = 5.1
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = -1
Query: 411 SQLIALI--LSESCLTK---KEYHRIL*FFNPITITENH*CVVD-I*QVGNLKSANK 259
S IAL+ S S LT K YH ++ F I E+H CVVD + + G L+ A+K
Sbjct: 774 STFIALLSACSHSGLTDEGLKYYHLMIEHFGIIPTPEHHVCVVDMLGRAGRLQEAHK 830
>01_06_1554 + 38217297-38217539,38217783-38218352,38218439-38219008
Length = 460
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 511 KRKDFLCGFRKRKLERKKKAQEDLQRLLKEEKRRIK 618
+ +DF+CG KR ++A++ R K+E+R++K
Sbjct: 417 RARDFVCGLAKRMRRAAERAED---RAKKDEQRKVK 449
>12_02_0035 -
12563503-12564405,12564494-12565611,12565709-12566239,
12566337-12567153
Length = 1122
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 544 RKLERKKKAQEDLQRLLKEEKRRIKQENKRILQKTSCFQ 660
RKL KKK + ++LL EEK+++ K +K +Q
Sbjct: 881 RKLSGKKKELSEEKKLLTEEKKKLLAREKAFERKIIEYQ 919
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,793,469
Number of Sequences: 37544
Number of extensions: 195439
Number of successful extensions: 734
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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