Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e24
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)                 29   4.9  
SB_29524| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_34308| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
          Length = 440

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 292 IKTISTRSNWLQIADFGGNSGLVILCY 212
           ++ +STR+ WL++ +F  N+G V  CY
Sbjct: 106 VENLSTRAKWLELKEFMNNAGEV--CY 130


>SB_29524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 117 QPFLITFLSYFVNIDNFFYTENSFERILDEK 25
           +PFL ++   F   DNFF T   FE +LD+K
Sbjct: 152 KPFLNSYRHIFC--DNFFTTVRLFEHLLDQK 180


>SB_34308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 517

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
 Frame = +2

Query: 506 CPRPTKRSAG--GSVDADEGAIEAIRITYKKNSLANWDSIMNSPPKAFNMRF*RGLSLSV 679
           CP  T R  G  G V+     + A+  T  +N  + W   +N    A+N         S 
Sbjct: 367 CPTQTSREVGEKGQVEKCNQTLLAMLRTLPENQKSKWKDSLNKVVHAYNCTRNDSTGFSP 426

Query: 680 YYL 688
           +YL
Sbjct: 427 FYL 429


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,237,032
Number of Sequences: 59808
Number of extensions: 396802
Number of successful extensions: 937
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)