Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4e20
(662 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10669| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0) 38 0.007
SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37) 37 0.013
SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 33 0.16
SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28) 33 0.21
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7) 29 0.64
SB_11900| Best HMM Match : SMN (HMM E-Value=6.3e-10) 31 1.1
SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8) 30 1.5
SB_77| Best HMM Match : cNMP_binding (HMM E-Value=0.0097) 30 1.9
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0) 29 2.6
SB_1312| Best HMM Match : TUDOR (HMM E-Value=0.013) 29 3.4
SB_2261| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_41997| Best HMM Match : RVT_1 (HMM E-Value=3) 28 7.8
>SB_10669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 37
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 338 WKAGMPCRAVYEGDGLEYEAFILRVISDTE-CVVRF 442
WK G CRA++ DGL YEA I + D + C+V +
Sbjct: 1 WKVGDSCRAIFSEDGLMYEAVITSIDCDAQTCIVMY 36
>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 2538
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/49 (42%), Positives = 26/49 (53%)
Frame = +2
Query: 344 AGMPCRAVYEGDGLEYEAFILRVISDTECVVRFLGYENSELVPLNALKP 490
AG PC A + D Y A I V D VR++ Y NSE +PL+ L P
Sbjct: 1716 AGWPCLAQFTDDDAWYRAEIQEV-KDGGVDVRYMDYGNSEFLPLSRLSP 1763
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +2
Query: 341 KAGMPCRAVYEGDGLEYEAFILRVISDTECVVRFLGYENSELVP---LNALKP 490
+ G PC A++ D Y + V + V+F+ Y NSE++P L A++P
Sbjct: 719 RVGTPCCAMFSVDEGWYRGLVTGVTRANQVEVQFVDYGNSEIMPPSQLRAMRP 771
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 347 GMPCRAVYEGDGLEYEAFILRVISDTECVVRFLGYENSELVPLNALKP 490
G PC A + D Y A ++ + D VR++ + N+E +P++ L P
Sbjct: 1533 GKPCLAKFTEDNAWYRA-VITAVEDPTFHVRYVDFGNTECLPVDRLAP 1579
Score = 31.5 bits (68), Expect = 0.63
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 323 KKETEWKAGMPCRAVYEGDGLEYEAFILRVISDTECVVRFLGYENSELVPLNALK 487
K T + +PC A+Y D Y A I++ I + +V+F Y NS+ + + +K
Sbjct: 1333 KLVTSPRVRLPCVAIYSDDESWYRA-IIQSIQGAKGIVQFSDYGNSQEIQMKDVK 1386
>SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)
Length = 1219
Score = 37.1 bits (82), Expect = 0.013
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 347 GMPCRAVYEGDGLEYEAFILRVISDTECVVRFLGYENSELVPLNALKPSL 496
G PC A + DG+ Y A + + V ++ + NSELV L+AL+ +
Sbjct: 420 GQPCAAQFADDGMWYRAVVSCFHGNDRVEVNYVDFGNSELVALSALRTDM 469
Score = 31.1 bits (67), Expect = 0.84
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 347 GMPCRAVYEGDGLEYEAFILRVISDT--ECVVRFLGYENSELVPLNALKPSLGNEERTRQ 520
GM C Y D + Y A ++ V S VR++ Y N E++P +L L TR+
Sbjct: 714 GMLCCGQYTEDDMWYRAQVISVESGNPLSAHVRYIDYGNDEVLPPASLTKKLHCPYTTRE 773
Query: 521 IEEAL 535
+ L
Sbjct: 774 LRSHL 778
>SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 791
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 1 DNFQFTLETKF*LKENLNTKKYLKEYLIYNPHQN 102
+N F L + L EN+NTKKYLK++ N + N
Sbjct: 441 ENIAFCLRLRVELSENVNTKKYLKKHSYGNANTN 474
>SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)
Length = 1282
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +2
Query: 347 GMPCRAVYEGDGLEYEAFILRVISDTECVVRFLGYENSELVPLNALK 487
G C A Y D Y A IL S+ VRF+ Y N E VP++ +K
Sbjct: 95 GQACCAQYSADEQWYRAEILST-SEDGVYVRFVDYGNEETVPVSKVK 140
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 31.5 bits (68), Expect = 0.63
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 305 RPTSSNKKETEWKAGMPCRAVYEGD 379
+PT SN+K EWK G+PC+ E D
Sbjct: 185 KPTKSNQKAIEWK-GVPCQRCVEQD 208
>SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7)
Length = 590
Score = 29.5 bits (63), Expect(2) = 0.64
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 554 HRHHYPAA-LLLFDGSSPHFPDLVLARLMALTLNFHN 447
H HH+P LLL SSPH+ + ++ +N H+
Sbjct: 485 HHHHHPTGQLLLTSSSSPHWSIITHIIIITTLVNHHS 521
Score = 20.6 bits (41), Expect(2) = 0.64
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = -1
Query: 575 PETDFQSHRHHYP 537
P + SH HH+P
Sbjct: 453 PLVNHHSHHHHHP 465
>SB_11900| Best HMM Match : SMN (HMM E-Value=6.3e-10)
Length = 240
Score = 30.7 bits (66), Expect = 1.1
Identities = 31/127 (24%), Positives = 52/127 (40%)
Frame = +2
Query: 107 KSEILYVRGMNISXXXXXXXXDVWDDKKLNDAYDKALKMANAEVAKRVAMSTNTEHGNKG 286
+ E++Y G + S D+WDD L +AYD+A+ + E+G G
Sbjct: 6 EGEVIYKAGQSTSVS------DIWDDSALIEAYDRAVNLIK-------------ENGLDG 46
Query: 287 KLKGKSRPTSSNKKETEWKAGMPCRAVYEGDGLEYEAFILRVISDTECVVRFLGYENSEL 466
SN+ T+W+ C A G ++A I ++ C V F+ S+
Sbjct: 47 ----------SNQAATQWQVSDLCLAPEHPSGHMHQAVINTFLTAYTCKVTFVRSRRSQE 96
Query: 467 VPLNALK 487
V + L+
Sbjct: 97 VQTSRLQ 103
>SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)
Length = 796
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/90 (22%), Positives = 40/90 (44%)
Frame = +2
Query: 386 EYEAFILRVISDTECVVRFLGYENSELVPLNALKPSLGNEERTRQIEEALQDNGDDGFGS 565
E I R + D C + + Y+N +VP+N+ K ++ + +I + ++ + F
Sbjct: 53 ENNGLIDRWVQDAYCGDKAVDYDNEFVVPMNS-KMNILDNRNVLEISKNTSNSANKSF-E 110
Query: 566 QSPDLDRMQFGSDRGVHSPESTDRSTPRKP 655
S ++ G+ G +S S + P P
Sbjct: 111 DSVKTEKDSIGTKHGGNSKNSEESCKPFDP 140
>SB_77| Best HMM Match : cNMP_binding (HMM E-Value=0.0097)
Length = 498
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +2
Query: 470 PLNALKPSLGNEERTRQIEEALQDNGDDGFGSQSPDLDRMQF--GSDRGVHSPESTDRST 643
P++ + G ++ + +E A D + + SPD F GSD V +P ++D +
Sbjct: 183 PVDTTESPRGALKKPQTLETAGADASNGSSAAASPDSGLASFSAGSDPKVSAPGNSDDHS 242
Query: 644 PRKP 655
P KP
Sbjct: 243 PSKP 246
>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
Length = 2276
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 251 AMSTNTEHGNKGKLKGKSRPTSSNKKETEWKAG 349
A ++ EHG K+KG S+ S++KK T+ KAG
Sbjct: 1301 AEASGKEHGKGSKVKGNSK-RSNSKKGTKSKAG 1332
>SB_1312| Best HMM Match : TUDOR (HMM E-Value=0.013)
Length = 153
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 362 AVYEGDGLEYEAFILRVISDTECVVRFLGYENSELVPLNALK 487
A DG+ Y A I V++ + VRFL Y + ++ +AL+
Sbjct: 16 AAKNSDGMYYRAMIKAVLAPNQYCVRFLDYGDFAILQSSALQ 57
>SB_2261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 572
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 452 ENSELVPLNALKPSLGNEERTRQIEEALQDNGDDGFGSQSPDLDRMQFGSDRGVH-SPES 628
EN L+ K LG+E+ T +EE + + D + QS DR R +P+
Sbjct: 325 ENVALIKEELAKMDLGDEDTTGDVEEVISNADDAQYVEQSYFKDRQNSIDKRDPQGNPDK 384
Query: 629 TDR 637
+D+
Sbjct: 385 SDQ 387
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 314 SSNKKETEWKAGMPCRAVYEGDGLEYEAFILRVISDTECVVRFLGYENSELVPLNALKP 490
S+N E + C A Y G Y A + D V ++ + N E +PL +L+P
Sbjct: 1463 STNHVEFTPEVKTVCAAKYSESGEWYRAIVETRNPDRTAGVFYVDFGNRETLPLTSLQP 1521
>SB_41997| Best HMM Match : RVT_1 (HMM E-Value=3)
Length = 532
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -1
Query: 602 HFQTAFDQDPETDFQSHRHHYPAALLLFDGSSPHFPDLVLARL-MALTLNFHNLKISQHI 426
H TA DP H H+ L + +S H P L+ R + + N HN + S ++
Sbjct: 190 HVNTAISSDP-----GHNHYIVHGTKLCENNSQHLPVLITTRHDYSTSANTHNARNSSNL 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,168,438
Number of Sequences: 59808
Number of extensions: 313794
Number of successful extensions: 996
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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