Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4e20
(662 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81048-7|CAC42273.1| 207|Caenorhabditis elegans Hypothetical pr... 35 0.059
Z81048-6|CAB02838.1| 197|Caenorhabditis elegans Hypothetical pr... 35 0.059
Y17255-1|CAB41945.1| 197|Caenorhabditis elegans SMN protein pro... 35 0.059
AF156887-1|AAF00192.1| 207|Caenorhabditis elegans survival moto... 35 0.059
Z83122-3|CAB05596.1| 113|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z68760-15|CAL44969.1| 462|Caenorhabditis elegans Hypothetical p... 29 3.9
Z68760-13|CAD30434.1| 423|Caenorhabditis elegans Hypothetical p... 29 3.9
Z68760-12|CAD27623.1| 436|Caenorhabditis elegans Hypothetical p... 29 3.9
Z68760-11|CAA92997.2| 438|Caenorhabditis elegans Hypothetical p... 29 3.9
X68070-1|CAA48207.1| 438|Caenorhabditis elegans Lin-3 protein. 29 3.9
AL032641-9|CAL44964.1| 462|Caenorhabditis elegans Hypothetical ... 29 3.9
AL032641-7|CAD30455.1| 423|Caenorhabditis elegans Hypothetical ... 29 3.9
AL032641-6|CAD27613.1| 436|Caenorhabditis elegans Hypothetical ... 29 3.9
AL032641-5|CAA21649.2| 438|Caenorhabditis elegans Hypothetical ... 29 3.9
AC024206-6|AAF36048.2| 243|Caenorhabditis elegans Hypothetical ... 27 9.0
>Z81048-7|CAC42273.1| 207|Caenorhabditis elegans Hypothetical
protein C41G7.1b protein.
Length = 207
Score = 34.7 bits (76), Expect = 0.059
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Frame = +2
Query: 170 DVWDDKKLNDAYDKALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKETEWKAG 349
DVWDD +L YD++L+ E++K + T K KG+ + K WK G
Sbjct: 15 DVWDDTELIKMYDESLQ----EISKNETSAKITSR----KFKGE------DGKMYTWKVG 60
Query: 350 MPCRAVYE--GDGLEYEAFILRV--ISDTECVVRFLGYENSELVPLNAL 484
C A YE G+ +Y A I + + E V F+ Y +V + L
Sbjct: 61 GKCMAPYEENGEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDL 109
>Z81048-6|CAB02838.1| 197|Caenorhabditis elegans Hypothetical
protein C41G7.1a protein.
Length = 197
Score = 34.7 bits (76), Expect = 0.059
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Frame = +2
Query: 170 DVWDDKKLNDAYDKALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKETEWKAG 349
DVWDD +L YD++L+ E++K + T K KG+ + K WK G
Sbjct: 5 DVWDDTELIKMYDESLQ----EISKNETSAKITSR----KFKGE------DGKMYTWKVG 50
Query: 350 MPCRAVYE--GDGLEYEAFILRV--ISDTECVVRFLGYENSELVPLNAL 484
C A YE G+ +Y A I + + E V F+ Y +V + L
Sbjct: 51 GKCMAPYEENGEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDL 99
>Y17255-1|CAB41945.1| 197|Caenorhabditis elegans SMN protein
protein.
Length = 197
Score = 34.7 bits (76), Expect = 0.059
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Frame = +2
Query: 170 DVWDDKKLNDAYDKALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKETEWKAG 349
DVWDD +L YD++L+ E++K + T K KG+ + K WK G
Sbjct: 5 DVWDDTELIKMYDESLQ----EISKNETSAKITSR----KFKGE------DGKMYTWKVG 50
Query: 350 MPCRAVYE--GDGLEYEAFILRV--ISDTECVVRFLGYENSELVPLNAL 484
C A YE G+ +Y A I + + E V F+ Y +V + L
Sbjct: 51 GKCMAPYEENGEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDL 99
>AF156887-1|AAF00192.1| 207|Caenorhabditis elegans survival motor
neuron protein protein.
Length = 207
Score = 34.7 bits (76), Expect = 0.059
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Frame = +2
Query: 170 DVWDDKKLNDAYDKALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKETEWKAG 349
DVWDD +L YD++L+ E++K + T K KG+ + K WK G
Sbjct: 15 DVWDDTELIKMYDESLQ----EISKNETSAKITSR----KFKGE------DGKMYTWKVG 60
Query: 350 MPCRAVYE--GDGLEYEAFILRV--ISDTECVVRFLGYENSELVPLNAL 484
C A YE G+ +Y A I + + E V F+ Y +V + L
Sbjct: 61 GKCMAPYEENGEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDL 109
>Z83122-3|CAB05596.1| 113|Caenorhabditis elegans Hypothetical
protein R11A5.6 protein.
Length = 113
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 545 GDDGFGSQSPDLDRMQFGSDRGVHSPESTD 634
G+DG G + P +D +F +G H P+ +
Sbjct: 57 GEDGEGCKQPRVDIKKFRKKKGAHKPQEPE 86
>Z68760-15|CAL44969.1| 462|Caenorhabditis elegans Hypothetical
protein F36H1.4d protein.
Length = 462
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 488 PSLGNEERTRQIEEALQDNGDDGFGSQSPDLDRMQFGSDRGVHSPESTDRSTPRKPTK 661
PS +ER+ + +N + GS PD R ++ +P ST STP PT+
Sbjct: 23 PSWFRQERSAPEQLQSAENAAENSGSVPPDTSRNSLETNEIGDAPSST--STPETPTE 78
>Z68760-13|CAD30434.1| 423|Caenorhabditis elegans Hypothetical
protein F36H1.4c protein.
Length = 423
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 488 PSLGNEERTRQIEEALQDNGDDGFGSQSPDLDRMQFGSDRGVHSPESTDRSTPRKPTK 661
PS +ER+ + +N + GS PD R ++ +P ST STP PT+
Sbjct: 25 PSWFRQERSAPEQLQSAENAAENSGSVPPDTSRNSLETNEIGDAPSST--STPETPTE 80
>Z68760-12|CAD27623.1| 436|Caenorhabditis elegans Hypothetical
protein F36H1.4b protein.
Length = 436
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 488 PSLGNEERTRQIEEALQDNGDDGFGSQSPDLDRMQFGSDRGVHSPESTDRSTPRKPTK 661
PS +ER+ + +N + GS PD R ++ +P ST STP PT+
Sbjct: 23 PSWFRQERSAPEQLQSAENAAENSGSVPPDTSRNSLETNEIGDAPSST--STPETPTE 78
>Z68760-11|CAA92997.2| 438|Caenorhabditis elegans Hypothetical
protein F36H1.4a protein.
Length = 438
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 488 PSLGNEERTRQIEEALQDNGDDGFGSQSPDLDRMQFGSDRGVHSPESTDRSTPRKPTK 661
PS +ER+ + +N + GS PD R ++ +P ST STP PT+
Sbjct: 25 PSWFRQERSAPEQLQSAENAAENSGSVPPDTSRNSLETNEIGDAPSST--STPETPTE 80
>X68070-1|CAA48207.1| 438|Caenorhabditis elegans Lin-3 protein.
Length = 438
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 488 PSLGNEERTRQIEEALQDNGDDGFGSQSPDLDRMQFGSDRGVHSPESTDRSTPRKPTK 661
PS +ER+ + +N + GS PD R ++ +P ST STP PT+
Sbjct: 25 PSWFRQERSAPEQLQSAENAAENSGSVPPDTSRNSLETNEIGDAPSST--STPETPTE 80
>AL032641-9|CAL44964.1| 462|Caenorhabditis elegans Hypothetical
protein F36H1.4d protein.
Length = 462
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 488 PSLGNEERTRQIEEALQDNGDDGFGSQSPDLDRMQFGSDRGVHSPESTDRSTPRKPTK 661
PS +ER+ + +N + GS PD R ++ +P ST STP PT+
Sbjct: 23 PSWFRQERSAPEQLQSAENAAENSGSVPPDTSRNSLETNEIGDAPSST--STPETPTE 78
>AL032641-7|CAD30455.1| 423|Caenorhabditis elegans Hypothetical
protein F36H1.4c protein.
Length = 423
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 488 PSLGNEERTRQIEEALQDNGDDGFGSQSPDLDRMQFGSDRGVHSPESTDRSTPRKPTK 661
PS +ER+ + +N + GS PD R ++ +P ST STP PT+
Sbjct: 25 PSWFRQERSAPEQLQSAENAAENSGSVPPDTSRNSLETNEIGDAPSST--STPETPTE 80
>AL032641-6|CAD27613.1| 436|Caenorhabditis elegans Hypothetical
protein F36H1.4b protein.
Length = 436
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 488 PSLGNEERTRQIEEALQDNGDDGFGSQSPDLDRMQFGSDRGVHSPESTDRSTPRKPTK 661
PS +ER+ + +N + GS PD R ++ +P ST STP PT+
Sbjct: 23 PSWFRQERSAPEQLQSAENAAENSGSVPPDTSRNSLETNEIGDAPSST--STPETPTE 78
>AL032641-5|CAA21649.2| 438|Caenorhabditis elegans Hypothetical
protein F36H1.4a protein.
Length = 438
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 488 PSLGNEERTRQIEEALQDNGDDGFGSQSPDLDRMQFGSDRGVHSPESTDRSTPRKPTK 661
PS +ER+ + +N + GS PD R ++ +P ST STP PT+
Sbjct: 25 PSWFRQERSAPEQLQSAENAAENSGSVPPDTSRNSLETNEIGDAPSST--STPETPTE 80
>AC024206-6|AAF36048.2| 243|Caenorhabditis elegans Hypothetical
protein Y74C9A.1 protein.
Length = 243
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 28 KF*LKENLNTKKYLKEYLIYNPHQN 102
+F LK NTKK + EY YN QN
Sbjct: 92 RFILKYTSNTKKCVNEYFQYNHGQN 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,838,799
Number of Sequences: 27780
Number of extensions: 240923
Number of successful extensions: 762
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -