Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4e19
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 32 0.054
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 29 0.50
SPBC26H8.14c |cox17||metallochaperone Cox17|Schizosaccharomyces ... 28 1.2
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 27 2.7
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 26 3.5
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|... 26 4.7
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 25 6.2
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 25 8.2
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 25 8.2
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 25 8.2
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 32.3 bits (70), Expect = 0.054
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 136 VENLKKEHQLINQIIETEYEKKINSINSICEPPKVTHEKLLK 261
VENL+KE ++ETE EK+ CE + +KL K
Sbjct: 147 VENLRKELDKYKDLVETEAEKRAAITKEECEKSWLEQQKLYK 188
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 29.1 bits (62), Expect = 0.50
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 193 EKKINSINSI-CEPPKVTHEKLLKLNPCFQMRTKMIQC-YTENPHQPLKCSEAVQAFSNC 366
+KK I I C+ + K +L+PCFQ QC Y E+P + E V+A
Sbjct: 8 DKKNQEIFRISCQRCRQRKIKCDRLHPCFQCVKSNSQCFYPEDPIRRRAPKEYVEALERQ 67
Query: 367 VAYSRA 384
+A+ A
Sbjct: 68 IAFFEA 73
>SPBC26H8.14c |cox17||metallochaperone Cox17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 70
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 205 NSINSICEP-PKVTHEKLLKLNPCFQMRTKMIQCYTENPHQPLKCSEAVQAFSNCVA 372
++ + EP P + EK C + + C ++ + P++C++ ++A C+A
Sbjct: 8 STATKVSEPAPIASEEKPKPCCACPETKQARDACMLQSSNGPIECAKLIEAHKKCMA 64
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.6 bits (56), Expect = 2.7
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -1
Query: 231 WFANTVNRINFFFILGFNYLID*LMLFFEVLH-SPRPII---SISLLFV 97
+F N I+ F +GF LFF+VL RPII S+S++F+
Sbjct: 364 YFKGLSNIISSFAFIGFTLFATLSSLFFKVLKIHRRPIIVFGSLSIIFI 412
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 127 SWRVENLKKEHQLINQIIETEYEKKINSINSICEPPKVTHEKLLKL 264
SW +++LKK IN++ E E E + P K ++K +KL
Sbjct: 411 SWTIKSLKKIQNRINELPEEERE-TYTLEEGLGLPSKSIYKKTIKL 455
>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 162
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +1
Query: 247 EKLLKLNPCFQMRTKMIQCYTENPHQPLKCSEAVQAFS 360
E +KL +R+ +++C +E+P + L C + F+
Sbjct: 111 ELKIKLKEVESIRSDLLKCMSEHPDKSLICHPLAEKFA 148
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.4 bits (53), Expect = 6.2
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +1
Query: 124 WSWRVENLK-KEHQLINQIIETEYEKKINSINSICEPP--KVTHEKLLKLNP 270
W EN EH + N I E K++N + PP +T E+L +L P
Sbjct: 238 WDKAPENFTISEHVIENGISEDLINKEVNVVEEKLRPPVRLLTEEELNELLP 289
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 25.0 bits (52), Expect = 8.2
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -3
Query: 481 NKFQNIYAHEIFLSVMISLKY 419
+KF+N+Y+ IFLS++ +L +
Sbjct: 384 HKFRNLYSPNIFLSIVQALVF 404
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 25.0 bits (52), Expect = 8.2
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = -3
Query: 424 KY*TRLGNTGINLQLLSMQHNY*KPEQLPNTLKVDVDFLCSIESSLSSFGSMDSVSI 254
KY N + +L+ K QL T K D DF+ + + S+F + S +
Sbjct: 612 KYVQEFSNEDLQGKLIEANEKNYKLTQLLKTQKEDADFITNQYQNASTFAAEQSKEV 668
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 142 NLKKEHQLINQIIETEYEKKINS 210
NL+ H+LI+ I+ T + KINS
Sbjct: 34 NLRLYHELISVIVPTFWNGKINS 56
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,172
Number of Sequences: 5004
Number of extensions: 47104
Number of successful extensions: 130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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