Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e19
         (588 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)    31   0.53 
SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12)                      29   2.8  
SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0)                      29   3.7  
SB_59484| Best HMM Match : CHCH (HMM E-Value=0.18)                     28   4.9  
SB_32644| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   8.6  
SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)                    27   8.6  
SB_12076| Best HMM Match : CHCH (HMM E-Value=0.28)                     27   8.6  
SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)                   27   8.6  

>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
          Length = 2581

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +1

Query: 31   LGFNICGETENELEFKDKHIPGNKQQGDGDYWSWRVENLKK--EHQLINQIIETEYEKKI 204
            LG N+CG     + F++   P     G   +    +   KK   +Q+I+Q + TE E K 
Sbjct: 1384 LGINVCGRLSLPVAFREYESPFYPLSGSSSFSLSVIPTDKKLRLYQIISQRLPTEDENKY 1443

Query: 205  NSINSICEP 231
            + +  I  P
Sbjct: 1444 DFVTKISTP 1452


>SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12)
          Length = 1338

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 82  KHIPGNKQQGDGDYWSWRVENLKKEHQLINQIIETEYEKKI-NSINSICEPP 234
           + IP    Q DG  W  + ++LKK H+L  Q ++    ++  N   S C+ P
Sbjct: 723 RQIPWIHHQKDGKEWKQQWKDLKKVHKLEKQQLKMMRRRRAENEEKSRCDVP 774


>SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 1250

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 219 YLRTT*SYSRKIIETESMLPNEDKDDSMLHRKSTSTFKV 335
           Y  TT S+   + +TES+LP  D  D +  +KS  +F+V
Sbjct: 701 YSTTTVSFGSDLQDTESLLP--DLSDKLSEKKSFESFEV 737


>SB_59484| Best HMM Match : CHCH (HMM E-Value=0.18)
          Length = 125

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 259 KLNPCFQMRTKMIQCYTENPHQPLKCSEAVQAFSNC 366
           K++ C Q   +M +C T+ PH+  +C++     S C
Sbjct: 50  KMSRCTQQPNEMSRC-TQPPHEMSRCTQPPHEMSRC 84


>SB_32644| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 365

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 310 ENPHQPLKCSEAVQAFSNCVAYSRAED*FQ 399
           E PH+ L+C +A    SN + +SR    F+
Sbjct: 306 EKPHKCLECGKAFSQSSNLITHSRKHSGFK 335


>SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1720

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 82   KHIPGNKQQGDGDYWSWRVENLKKEHQ 162
            +H+PG +   DG      +E L +EH+
Sbjct: 1609 RHVPGKENSADGATRGLNIEELNREHR 1635


>SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)
          Length = 1328

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +1

Query: 79  DKHIPGNKQQGDGDYWSWRVENLKKEHQLINQIIETEYEK 198
           D+ I    ++GDG   +  ++ + K+HQ++N+++  EYEK
Sbjct: 502 DELIRALAKRGDG-LRTKLLQRMSKDHQVLNKMLCEEYEK 540


>SB_12076| Best HMM Match : CHCH (HMM E-Value=0.28)
          Length = 115

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 259 KLNPCFQMRTKMIQCYTENPHQPLKCSEAVQAFSNC 366
           +++ C Q   +M +C T+ PH+  +C++     S C
Sbjct: 40  EMSRCTQQPNEMSRC-TQQPHEMSRCTQPPHEMSRC 74


>SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)
          Length = 681

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 232 PKVTHEKLLKLNPCFQMRTKMIQCYTENPHQP 327
           P+V H  +  +NP F  R++ +Q   E+ H P
Sbjct: 602 PEVNHNVISAVNPFFADRSQFLQLGDESSHVP 633


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,291,435
Number of Sequences: 59808
Number of extensions: 311062
Number of successful extensions: 600
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)