Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e19
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    27   0.14 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.0  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -3

Query: 409 LGNTGINLQLLSMQHNY*KPEQLPNTL-----KVDVDFLCSIESSLSSFGSMDS 263
           L NT  N Q  S Q NY      P+TL     K+D D  CSIE S++S  S  S
Sbjct: 365 LDNTNTNDQDYSSQ-NYLTVHSFPSTLNIPSVKIDEDQKCSIE-SITSVNSTSS 416


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +1

Query: 262 LNPCFQMRTKMIQCYTENPHQPLKCSEAVQAFSNCVAYSR 381
           + P F   + + Q   E+P + L  +E    F N   Y R
Sbjct: 503 VRPPFTYASLIRQSIIESPDKQLTLNEIYNWFQNTFCYFR 542


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,997
Number of Sequences: 438
Number of extensions: 3104
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)