Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e17
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785...    33   0.26 
09_01_0175 - 2509014-2509064,2509389-2509490,2509603-2509729,250...    29   4.2  
05_01_0350 + 2736096-2736242,2736460-2736508,2736704-2737046,274...    29   4.2  
07_03_1149 - 24366416-24366470,24366586-24367751,24368375-24368725     28   7.3  
07_01_0695 + 5251802-5253016                                           28   7.3  

>06_03_0924 -
           25976629-25976979,25977471-25978424,25978512-25978565,
           25979135-25979254,25979357-25979532,25979624-25980107,
           25980541-25980744,25981671-25981877,25982179-25982271,
           25982433-25982621,25983364-25983423,25983591-25983927,
           25984195-25984432,25984614-25984816,25985549-25986554,
           25987125-25987290,25987715-25987824,25987944-25988195,
           25988360-25988402,25988488-25988550,25989512-25989624,
           25990787-25990838
          Length = 1824

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = +2

Query: 239 LLWAESQTIKSNLMLEELISAAISIDVHTEDQAKHYEGQIVHIIGPIEILEPISEPDYNI 418
           ++W  S T      L     +  S+D H EDQA+ Y      +         +++P  + 
Sbjct: 359 IVWGNSPTTAIQPCLTSCAISKESLDDHNEDQAEGYVSGCWDVQNKFHSSSVMADPFGHT 418

Query: 419 QV-QAVKLRKRVQMYQWI-EETTEQNNFLSEP 508
           ++  +   R     Y  + +ET ++NN L EP
Sbjct: 419 EIPDSTSYRSPENSYSPLRKETAQENNSLDEP 450


>09_01_0175 -
           2509014-2509064,2509389-2509490,2509603-2509729,
           2509852-2511564,2512335-2512424,2512533-2512801,
           2513118-2513687,2513703-2514065
          Length = 1094

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +2

Query: 389 EPISEPDYNIQVQAVKLRKRVQMYQWIEETTEQNNFLSEPAEEYQKTYWYHKDWRDYIVD 568
           + + E  YN++ Q V L K +   +W    +  NNF  E AE+  K     K  +D I  
Sbjct: 537 DKLYEEIYNLRQQLVTLSKSLLNSEWGLSVSHYNNF--EGAEDESKHRGNEKSSKDGITK 594

Query: 569 SN 574
            N
Sbjct: 595 EN 596


>05_01_0350 +
           2736096-2736242,2736460-2736508,2736704-2737046,
           2743911-2744499
          Length = 375

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +2

Query: 266 KSNLMLEELISAAISIDVHTEDQAKHYEGQIVHIIGPIEILEPI----SEPDYNIQVQAV 433
           K +L+ E  +  +  +D+  E +A HY+  I HII    +++P+    +     +     
Sbjct: 80  KPDLLREGNLEESAMVDMWMEVEAHHYDPAIFHIIREC-VIKPMIGGGARDQAIVDENVE 138

Query: 434 KLRKRVQMYQ 463
           KLRK +++Y+
Sbjct: 139 KLRKVLEVYE 148


>07_03_1149 - 24366416-24366470,24366586-24367751,24368375-24368725
          Length = 523

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 163 SCPRHLGNDFTSTLQVLLRIN 101
           +C RH+  D+T+ L VL+++N
Sbjct: 335 NCNRHINKDYTTMLAVLVKLN 355


>07_01_0695 + 5251802-5253016
          Length = 404

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
 Frame = +2

Query: 149 MAWTAVKNQFKETWLTTSLSLILFTGVTYFLLWAESQTIKSNLMLEELISAAISIDVHTE 328
           + W A++        + ++  ++  GV YFLL   S+   SN  L       +  D+ TE
Sbjct: 209 LQWRAIQGPQLPVCSSNNMRSVVINGVAYFLL-DYSRLYCSNDGLLIRPGNIVPFDLETE 267

Query: 329 DQAKHYEG--------QIVHIIGPIEILEPISEPDYNIQVQAVKLRKRVQMYQWIEETTE 484
           +      G         ++ I   +EI+EP+S  D N  +  V       M  W     E
Sbjct: 268 EWMGILNGPKPVARGRDMIVISSTLEIMEPLSLADLNGSLVMVHAVYGSPMDLWFLSDLE 327

Query: 485 QNNFLSEPAEEYQ 523
           Q  ++ + + +++
Sbjct: 328 QGLWVKKYSIDFE 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,397,776
Number of Sequences: 37544
Number of extensions: 290783
Number of successful extensions: 598
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)