Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e17
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10199| Best HMM Match : DUF1625 (HMM E-Value=2.1e-08)               95   4e-20
SB_40935| Best HMM Match : LRR_1 (HMM E-Value=0.035)                   29   4.3  
SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_59719| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_58643| Best HMM Match : RhoGAP (HMM E-Value=3.7)                    28   7.5  
SB_53124| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_39046| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_34933| Best HMM Match : RVT_1 (HMM E-Value=3.5e-08)                 28   7.5  
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)                      28   7.5  
SB_18777| Best HMM Match : RhoGAP (HMM E-Value=4.9)                    28   7.5  
SB_14210| Best HMM Match : RVT_1 (HMM E-Value=0.2)                     28   7.5  
SB_11884| Best HMM Match : RhoGAP (HMM E-Value=7.4)                    28   7.5  
SB_3299| Best HMM Match : RhoGAP (HMM E-Value=2.2)                     28   7.5  
SB_55944| Best HMM Match : RVT_1 (HMM E-Value=1.6e-11)                 28   7.5  
SB_36799| Best HMM Match : DUF74 (HMM E-Value=1.9)                     28   7.5  
SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)                   28   7.5  
SB_21912| Best HMM Match : RhoGAP (HMM E-Value=3.7)                    28   7.5  
SB_12628| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_9297| Best HMM Match : RVT_1 (HMM E-Value=7e-21)                    28   7.5  
SB_2811| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_267| Best HMM Match : RhoGAP (HMM E-Value=3.7)                      28   7.5  

>SB_10199| Best HMM Match : DUF1625 (HMM E-Value=2.1e-08)
          Length = 401

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 46/135 (34%), Positives = 83/135 (61%)
 Frame = +2

Query: 239 LLWAESQTIKSNLMLEELISAAISIDVHTEDQAKHYEGQIVHIIGPIEILEPISEPDYNI 418
           L W E + ++++L L+E + A I +    E   K+ + ++VH++G +   + +S+ DY +
Sbjct: 176 LYWNEGRAVQTSLSLDEGLRAVIPLHSINEINRKNQD-KLVHLVGHLHTDKVLSDADYGV 234

Query: 419 QVQAVKLRKRVQMYQWIEETTEQNNFLSEPAEEYQKTYWYHKDWRDYIVDSNLFYIRPGH 598
            V+AVKL++ V+MYQW+E ++ +  +     +  + TY Y+K+W  +IV+S+ F    GH
Sbjct: 235 AVKAVKLKREVEMYQWVEHSSTR-EYDEGDRKRVETTYSYNKEWLSHIVNSHQFDNPHGH 293

Query: 599 HNPTSMPLFSETHIA 643
            NPTSM + S+T  A
Sbjct: 294 QNPTSMAVSSQTQEA 308


>SB_40935| Best HMM Match : LRR_1 (HMM E-Value=0.035)
          Length = 428

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 418 YVVVRLRYRFQYFNWAYDMNNLSFIMFGLVFCVHIYTY 305
           YV+  L Y   Y  + Y +  + + +FG+ FC HI+ +
Sbjct: 370 YVMPHLEYVMPYLEYVYAIFGVRYAIFGVRFC-HIWLW 406


>SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 380 EILEPISEPDYNIQVQAVKLRKRVQMYQWIEETTEQNNFLSEPA 511
           EI+E   EPD N      +LR+ + +YQ ++++T +  + S P+
Sbjct: 565 EIIEKQHEPDSNHLAILSRLRQLLSVYQQMDDSTRKYPWPSPPS 608


>SB_59719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 492 LFCSVVSSIH*YICTLFLNLTAWTC 418
           ++CS++ SI  Y C +F NL  + C
Sbjct: 86  VYCSLIRSILEYACVVFSNLPQYLC 110


>SB_58643| Best HMM Match : RhoGAP (HMM E-Value=3.7)
          Length = 295

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 492 LFCSVVSSIH*YICTLFLNLTAWTC 418
           ++CS++ SI  Y C +F NL  + C
Sbjct: 169 VYCSLIRSILEYACVVFSNLPQYLC 193


>SB_53124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 492 LFCSVVSSIH*YICTLFLNLTAWTC 418
           ++CS++ SI  Y C +F NL  + C
Sbjct: 122 VYCSLIRSILEYACVVFSNLPQYLC 146


>SB_39046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 492 LFCSVVSSIH*YICTLFLNLTAWTC 418
           ++CS++ SI  Y C +F NL  + C
Sbjct: 76  VYCSLIRSILEYACVVFSNLPQYLC 100


>SB_34933| Best HMM Match : RVT_1 (HMM E-Value=3.5e-08)
          Length = 390

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 492 LFCSVVSSIH*YICTLFLNLTAWTC 418
           ++CS++ SI  Y C +F NL  + C
Sbjct: 264 VYCSLIRSILEYACVVFSNLPQYLC 288


>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
          Length = 1691

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +2

Query: 386 LEPISEPDYNIQVQAVKLRKRVQMYQWIEETTEQNNFLSEPAE----EYQKTYWYHKDWR 553
           L PIS  DY+   + V++   V  +   +   +++N L  P+       QKTYW    W 
Sbjct: 88  LGPISLDDYDSISKMVQMISYVATFNQFDNVIQEDNTLLLPSHLVPLSSQKTYWGGICWL 147

Query: 554 DYIVDSNLFYIR 589
            +  DS    ++
Sbjct: 148 LHQFDSETVRVK 159


>SB_18777| Best HMM Match : RhoGAP (HMM E-Value=4.9)
          Length = 260

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 492 LFCSVVSSIH*YICTLFLNLTAWTC 418
           ++CS++ SI  Y C +F NL  + C
Sbjct: 134 VYCSLIRSILEYACVVFSNLPQYLC 158


>SB_14210| Best HMM Match : RVT_1 (HMM E-Value=0.2)
          Length = 712

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 492 LFCSVVSSIH*YICTLFLNLTAWTC 418
           ++CS++ SI  Y C +F NL  + C
Sbjct: 586 VYCSLIRSILEYACVVFSNLPQYLC 610


>SB_11884| Best HMM Match : RhoGAP (HMM E-Value=7.4)
          Length = 248

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 492 LFCSVVSSIH*YICTLFLNLTAWTC 418
           ++CS++ SI  Y C +F NL  + C
Sbjct: 122 VYCSLIRSILEYACVVFSNLPQYLC 146


>SB_3299| Best HMM Match : RhoGAP (HMM E-Value=2.2)
          Length = 248

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 492 LFCSVVSSIH*YICTLFLNLTAWTC 418
           ++CS++ SI  Y C +F NL  + C
Sbjct: 122 VYCSLIRSILEYACVVFSNLPQYLC 146


>SB_55944| Best HMM Match : RVT_1 (HMM E-Value=1.6e-11)
          Length = 387

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 492 LFCSVVSSIH*YICTLFLNLTAWTC 418
           ++CS++ SI  Y C +F NL  + C
Sbjct: 261 VYCSLIRSILEYACVVFSNLPQYLC 285


>SB_36799| Best HMM Match : DUF74 (HMM E-Value=1.9)
          Length = 251

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 492 LFCSVVSSIH*YICTLFLNLTAWTC 418
           ++CS++ SI  Y C +F NL  + C
Sbjct: 134 VYCSLIRSILEYACVVFSNLPQYLC 158


>SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)
          Length = 1051

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/79 (18%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = +2

Query: 287 ELISAAISIDVHTEDQAKH-YEGQIVHIIGPIEILEPISEPDYNIQVQAVKLRKRV-QMY 460
           E ++A + I     ++ +H YE +I H+   +E +E       +   +   + +R+  + 
Sbjct: 229 EALNAKLEILTREVEEERHRYEEEIAHLTEQLECMERTKTEAEDKLAEMPNIAQRITDLE 288

Query: 461 QWIEETTEQNNFLSEPAEE 517
           + +++ T++NN L    ++
Sbjct: 289 KLVQQLTKENNNLKHTKDD 307


>SB_21912| Best HMM Match : RhoGAP (HMM E-Value=3.7)
          Length = 238

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 492 LFCSVVSSIH*YICTLFLNLTAWTC 418
           ++CS++ SI  Y C +F NL  + C
Sbjct: 169 VYCSLIRSILEYACVVFSNLPQYLC 193


>SB_12628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1163

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 492  LFCSVVSSIH*YICTLFLNLTAWTC 418
            ++CS++ SI  Y C +F NL  + C
Sbjct: 1037 VYCSLIRSILEYACVVFSNLPQYLC 1061


>SB_9297| Best HMM Match : RVT_1 (HMM E-Value=7e-21)
          Length = 1032

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +2

Query: 386  LEPISEPDYNIQVQAVKLRKRVQMYQWIEETTEQNNFLSEPAE----EYQKTYWYHKDWR 553
            L PIS  DY+   + V++   V  +   +   +++N L  P+       QKTYW    W 
Sbjct: 816  LGPISLDDYDSISKMVQMISYVATFNQFDNVIQEDNTLLLPSHLVPLSSQKTYWGGICWL 875

Query: 554  DYIVDSNLFYIR 589
             +  DS    ++
Sbjct: 876  LHQFDSETVRVK 887


>SB_2811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 744

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 492 LFCSVVSSIH*YICTLFLNLTAWTC 418
           ++CS++ SI  Y C +F NL  + C
Sbjct: 618 VYCSLIRSILEYACVVFSNLPQYLC 642


>SB_267| Best HMM Match : RhoGAP (HMM E-Value=3.7)
          Length = 284

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 492 LFCSVVSSIH*YICTLFLNLTAWTC 418
           ++CS++ SI  Y C +F NL  + C
Sbjct: 158 VYCSLIRSILEYACVVFSNLPQYLC 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,566,092
Number of Sequences: 59808
Number of extensions: 363100
Number of successful extensions: 779
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)