Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e17
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39390.2 68417.m05576 transporter-related low similarity to g...    31   0.87 
At4g39390.1 68417.m05575 transporter-related low similarity to g...    31   0.87 
At1g51790.1 68414.m05836 leucine-rich repeat protein kinase, put...    30   1.5  
At2g27700.1 68415.m03356 eukaryotic translation initiation facto...    29   2.0  
At4g18200.1 68417.m02705 purine permease family protein similar ...    29   3.5  
At4g28800.1 68417.m04118 bHLH family protein contains Pfam profi...    28   4.6  
At1g57980.1 68414.m06570 purine permease-related low similarity ...    28   4.6  
At1g60300.1 68414.m06790 apical meristem formation protein-relat...    28   6.1  
At4g14870.1 68417.m02284 expressed protein                             27   8.1  
At1g16140.1 68414.m01934 wall-associated kinase, putative contai...    27   8.1  

>At4g39390.2 68417.m05576 transporter-related low similarity to
           glucose-6-phosphate/phosphate-translocator precursor
           [Solanum tuberosum] GI:2997593
          Length = 337

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 186 VSLNWFFTAVHAIWETILLPHYKYYLESTWT 94
           V+LN F  A  A+W T L  +Y +YL+  ++
Sbjct: 157 VNLNGFLAAAIAVWSTALQQYYVHYLQRKYS 187


>At4g39390.1 68417.m05575 transporter-related low similarity to
           glucose-6-phosphate/phosphate-translocator precursor
           [Solanum tuberosum] GI:2997593
          Length = 337

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 186 VSLNWFFTAVHAIWETILLPHYKYYLESTWT 94
           V+LN F  A  A+W T L  +Y +YL+  ++
Sbjct: 157 VNLNGFLAAAIAVWSTALQQYYVHYLQRKYS 187


>At1g51790.1 68414.m05836 leucine-rich repeat protein kinase,
           putative smilar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 881

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 124 MWK*NRFPDGVDSCKKPI*RNLVNNFAQSDFIYGSY 231
           MW    FP+G+ +C      +      ++DF+YG+Y
Sbjct: 78  MWSVRSFPEGIRNCYTIAVNSSTKYLIRADFMYGNY 113


>At2g27700.1 68415.m03356 eukaryotic translation initiation factor 2
           family protein / eIF-2 family protein similar to
           SP|P39730 Translation initiation factor IF-2
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00009: Elongation factor Tu GTP binding domain,
           PF03144: Elongation factor Tu domain 2
          Length = 479

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 263 IKSNLMLEELISAAISIDVHTEDQAKHYEGQIVHIIGPIEILEPISE 403
           +  N +  E+I AA  I++  +D      G  +H++GP + +E I E
Sbjct: 318 VNGNHVHHEVIKAAECINIIAKDLEHVIVGTALHVVGPDDDIEAIKE 364


>At4g18200.1 68417.m02705 purine permease family protein similar to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 1128

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/47 (29%), Positives = 30/47 (63%)
 Frame = +2

Query: 209 LILFTGVTYFLLWAESQTIKSNLMLEELISAAISIDVHTEDQAKHYE 349
           LILF  +  FL++++   I++NL  +E ++  + I+  +  Q+K+Y+
Sbjct: 22  LILFANLL-FLMFSDHNNIEANLTGQEEMNTTMEIESSSVPQSKNYK 67


>At4g28800.1 68417.m04118 bHLH family protein contains Pfam profile:
           PF00010 helix-loop-helix DNA-binding domain
          Length = 478

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 392 PISEPDYNIQVQAVKLRKRVQMYQWIEETTEQNNFLSE 505
           P+S+P  ++  Q + +++  +MY W+  +  QN F SE
Sbjct: 62  PLSQPPPHLHQQNLFIQEG-EMYSWLHHSYRQNYFCSE 98


>At1g57980.1 68414.m06570 purine permease-related low similarity to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 394

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +2

Query: 128 GSKIVSQMAWTAVKNQFKET-WLTTSLSLIL 217
           GS+++  + +TA+ N+FK T W+  S+ LIL
Sbjct: 159 GSQLIFTLIFTAIINRFKFTRWIIISIVLIL 189


>At1g60300.1 68414.m06790 apical meristem formation protein-related
           contains similarity to CUC1 [Arabidopsis thaliana]
           gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
           gi|1279640|emb|CAA63101
          Length = 322

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 171 FFTAVHAIWETILLPHYKYYLEST 100
           F+T   ++ E  LLP Y YYL +T
Sbjct: 162 FYTTSESVLENELLPSYGYYLSNT 185


>At4g14870.1 68417.m02284 expressed protein
          Length = 177

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
 Frame = +2

Query: 236 FLLWAESQTIKSNLMLEELISAAISIDVHTEDQAKHYEGQIVHIIGPIEILEPISEPDYN 415
           F ++ E +T+ ++ + +     A +I+   +      E +      P E  E  S  D  
Sbjct: 31  FPVYTEIRTMTTSNLRKSACFVAKAIEQRRDTAGSESESEATP--SPAE--ESGSGEDKE 86

Query: 416 IQVQAV--KLRKRVQMYQWIEETTEQNNFLSEPAEEYQKTYW 535
           +++ A+  +++  ++  +  EE   +N FLS  AEE ++  W
Sbjct: 87  VEISAIGAEIKAAMEQRKTAEEEKGKNEFLSGVAEEVKEIEW 128


>At1g16140.1 68414.m01934 wall-associated kinase, putative contains
           similarity to wall-associated kinase 4 GI:3355308 from
           [Arabidopsis thaliana]
          Length = 690

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 272 NLMLEELISAAISIDVHTEDQAKHYEGQIVHI 367
           ++ LE + S+   +DVHTE++ +  E Q++ I
Sbjct: 653 SIKLERIRSSPKDLDVHTENEEEEEEDQLMEI 684


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,097,204
Number of Sequences: 28952
Number of extensions: 260456
Number of successful extensions: 614
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)