Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4e16
(529 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36598| Best HMM Match : E-MAP-115 (HMM E-Value=0.092) 34 0.063
SB_30772| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-09) 31 0.78
SB_58611| Best HMM Match : Collagen (HMM E-Value=0.4) 29 3.1
SB_18162| Best HMM Match : E-MAP-115 (HMM E-Value=0.21) 28 4.1
SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_55129| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06) 27 7.2
SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_12671| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_7620| Best HMM Match : Remorin_N (HMM E-Value=5.2) 27 9.6
>SB_36598| Best HMM Match : E-MAP-115 (HMM E-Value=0.092)
Length = 783
Score = 34.3 bits (75), Expect = 0.063
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -2
Query: 498 ENEKHRSNSELQY*AASRRHFPTSEPRQRTASRALEDRGATTRSEAQRAL 349
E EK+ + EL+ S HF E ++R RA+ED+ +SE ++ L
Sbjct: 332 EEEKYGKDGELRMLKESLAHFQAEEAKKREQIRAMEDQRKQEQSEKEKEL 381
>SB_30772| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-09)
Length = 207
Score = 30.7 bits (66), Expect = 0.78
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 392 KTAVPRRGAKLNARSTSILVRGASLGNGDSVTSNAHRSSH 273
KTAVPRRG K S++ R + + + +TS HR H
Sbjct: 112 KTAVPRRGVK-GLPLNSVIRRLVDVHSSEGMTSARHRKRH 150
>SB_58611| Best HMM Match : Collagen (HMM E-Value=0.4)
Length = 773
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -1
Query: 385 RCH--DAERSSTRALRPYSSEERRSGTETA*LQTPIAVLIWVWRLT 254
RC+ DA+ S+ A ++ G + L P A ++WVWR T
Sbjct: 442 RCYTKDADASTILAASKRPTQLHPDGPDPETLLPPSATVLWVWRTT 487
>SB_18162| Best HMM Match : E-MAP-115 (HMM E-Value=0.21)
Length = 659
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -1
Query: 385 RCH--DAERSSTRALRPYSSEERRSGTETA*LQTPIAVLIWVWRLTDHLTTASNGSDSSS 212
RC+ DA+ S+ A ++ G + L P A + WVWR T T G D SS
Sbjct: 365 RCYTKDADASTISAASKRPTQLHPDGPDPETLLPPSATVSWVWRTTKCQTV---GKDVSS 421
>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -1
Query: 457 SGQSPTFPNIRTTTANSLQSS*RPRCHDAERSSTRALRPYSSEERRS 317
S +SP+ P RTT S ++S + R++ R +SS +RR+
Sbjct: 155 SSKSPSPPTNRTTQGESPKTSSSGHGQHSSRTAVRRSASFSSSQRRT 201
>SB_55129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 372 ASWHRGLQELWRLFAVVVRMLGNVGDWPLNIVTRCSNG 485
A+W G E WRL + G++ W L ++ S G
Sbjct: 62 ATWSTGDLEYWRLGVLATWSTGDLEYWRLGVLATWSTG 99
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 372 ASWHRGLQELWRLFAVVVRMLGNVGDWPLNIVTRCSNG 485
A+W G E WRL + G++ W L ++ S G
Sbjct: 78 ATWSTGDLEYWRLGVLATWSTGDLEYWRLGVLATWSTG 115
>SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)
Length = 259
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 262 RLTDHLTTASNGSDSSSRGTEYST 191
RLT++ +ASNGSD + E ST
Sbjct: 2 RLTNYTLSASNGSDDETSNKEVST 25
>SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -1
Query: 460 LSGQSPTFPNIRTTTANSLQSS*RPRCHDAERSSTRALRPYSSEERRSGTET 305
+S QSPT P + + S C +R R P EER+ TET
Sbjct: 338 VSPQSPTQPQYYNKSTSFFDSI---SCEANDRDKNRKAHPSWQEERKLNTET 386
>SB_12671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 365 SLRVVAPRSSRALEAVRCRGSDVGKCRRLAA*YCNSLFERC 487
++RV+APR + A E S+ C R AA + E C
Sbjct: 57 NIRVIAPRKATASELAAFHSSEYVNCMRRAAEAVSDGSEEC 97
>SB_7620| Best HMM Match : Remorin_N (HMM E-Value=5.2)
Length = 330
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -1
Query: 385 RCH--DAERSSTRALRPYSSEERRSGTETA*LQTPIAVLIWVWRLT 254
RC+ DA+ S+ A ++ G + L P A + WVWR T
Sbjct: 206 RCYTKDADASTILAASKRPTQLHPDGPDPETLLPPSATVSWVWRTT 251
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,403,025
Number of Sequences: 59808
Number of extensions: 277624
Number of successful extensions: 843
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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