Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4e15
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0358 - 28677781-28677901,28678327-28678430,28678542-286786... 32 0.55
01_06_0780 - 31938064-31938127,31940191-31941743 31 0.72
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677... 31 0.95
02_05_1072 - 33878676-33878747,33878926-33879949,33880684-338808... 30 1.7
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626... 30 2.2
10_05_0093 - 9108883-9109068,9109156-9109248,9109363-9109441,910... 29 2.9
01_01_0750 + 5798607-5800142 29 2.9
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 29 3.9
04_04_1054 + 30437468-30437763,30438647-30438779,30439099-304391... 28 8.9
02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-96... 28 8.9
>01_06_0358 - 28677781-28677901,28678327-28678430,28678542-28678625,
28679221-28679265,28679523-28679594,28679721-28679759,
28679966-28680061,28680492-28680566,28681717-28681764,
28681888-28681971,28682141-28682341,28682394-28682561,
28683232-28683372,28683470-28683517,28683845-28684087,
28684184-28684297,28685134-28685163,28685361-28685951,
28686033-28686620,28686744-28686863,28687764-28687938,
28688397-28688562,28688653-28688755,28689227-28689319,
28690759-28690918,28691754-28691872
Length = 1275
Score = 31.9 bits (69), Expect = 0.55
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +1
Query: 460 PKIFDAVFECTLEMINKDFEEYPEHRTEFFLLLQAVNTNCFKAFLSIPPAQFKLVLD 630
P + D V E ++NK + P+ F L F L +PP Q ++ L+
Sbjct: 1156 PALVDFVMEILSRLVNKQIWKMPKLWVGFLKLAYQTQPRSFDVILQLPPPQLEIALN 1212
>01_06_0780 - 31938064-31938127,31940191-31941743
Length = 538
Score = 31.5 bits (68), Expect = 0.72
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 25 VEILKDPEAVKQ-LVSILKTNVRACRALAHPYVVQLGRIYLDMLNVYKVM 171
+++L +AVK +V ++K + R + HP +VQL + +Y VM
Sbjct: 72 IKVLDKEKAVKGGMVHLVKREINVLRRVRHPNIVQLFEVMASKTKIYFVM 121
>02_05_0146 -
26267245-26267339,26267427-26267469,26267589-26267725,
26268172-26268299,26268419-26268495,26268593-26268679,
26268817-26268933,26269115-26269165,26269383-26269497,
26270033-26270292
Length = 369
Score = 31.1 bits (67), Expect = 0.95
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 500 ISRVHSKTASNIFGTSEVICPSSLCTIAAMQDSTSGSRASGT 375
+S ++ N G +V+CP+ LCT AM +++ RA G+
Sbjct: 308 LSTPRTERCPNCSGAGKVMCPTCLCTGMAMANNSIDRRAWGS 349
>02_05_1072 -
33878676-33878747,33878926-33879949,33880684-33880804,
33881150-33881560,33881781-33881933,33882321-33882468
Length = 642
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = -1
Query: 554 NKKNSVLCSGYSSKSLLIISRVHSKTASNIFGTSEVICPS-SLCTIAAMQDSTSGSRASG 378
++++++ SG+S+ LLI ++ A+ + GTS P+ S + +D+ G+ + G
Sbjct: 423 SQQSTIPLSGFSANGLLIHGSFNNTCANKLGGTSSSCAPARSSNDLMVARDTKGGASSFG 482
Query: 377 TAVL 366
A+L
Sbjct: 483 GAML 486
>04_03_1020 -
21761297-21761555,21761630-21761739,21762402-21762635,
21762710-21762817,21762910-21762969,21763549-21763624,
21763710-21763870,21764485-21764547,21764657-21764744,
21765062-21765592,21766344-21766783
Length = 709
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +1
Query: 13 ASRNVEILKDPEAVKQLVSILKTNVRACRALAHPYVVQL--GRIYLDMLNVYKVMSENIS 186
A + V+++ D K+ + L + R L+HP +VQ + D L++Y S
Sbjct: 331 AIKEVQVISDDPHSKERLKQLNQEIDMLRQLSHPNIVQYYGSEMTDDALSIYLEFVSGGS 390
Query: 187 QAIALNGVAVTKQPLIKN 240
L K+P+I+N
Sbjct: 391 IHKLLREYGPFKEPVIRN 408
>10_05_0093 -
9108883-9109068,9109156-9109248,9109363-9109441,
9109529-9109639,9109715-9109857,9110050-9110522,
9110568-9111075,9111241-9111810,9111883-9112119,
9112196-9112465
Length = 889
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +1
Query: 358 DYQRTAVPEAREPEVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMINKDFEEYP 528
+++ +VP+ EP+V ++ +E I + D V E T+E +KD E P
Sbjct: 503 EHEVQSVPDVEEPDVALPDVQVLSSIEPTIHEDPNPTRDPVEETTVEATDKDKSEVP 559
>01_01_0750 + 5798607-5800142
Length = 511
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 25 VEILKDPEAVKQ-LVSILKTNVRACRALAHPYVVQLGRIYLDMLNVYKVM 171
+++++ + K L + +K + R + HP++VQL + L +Y VM
Sbjct: 53 IKVMEKEKIFKSGLTAHIKREIAVLRRVRHPHIVQLYEVMATKLRIYFVM 102
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -3
Query: 540 CSMFWILFKVFVNHFQSTFKDCIKYFWYFRSYMSFKSV 427
C++++ ++ + F S F +YFW + +FK V
Sbjct: 189 CNLYYGFVRILIKSFTSEFPHVERYFWTMVNQPNFKKV 226
>04_04_1054 +
30437468-30437763,30438647-30438779,30439099-30439159,
30439370-30439483,30439813-30439971,30440124-30440206,
30440423-30440549,30440872-30440951,30441027-30441113,
30441316-30441440,30441543-30441603,30441806-30441859,
30441946-30442023,30442449-30442554,30442655-30442803,
30442945-30443052
Length = 606
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -1
Query: 647 NAQIMESKTNLNCAGGMLKNALKQFVLTACSNKKNSVLCSGYSSKSLLII 498
+ + +E+ TNL+ G + NA+ + +L +K + L SG S+ L I
Sbjct: 345 DVETVETSTNLHFRGARVWNAIIEDLLAKGMSKAQNALLSGCSAGGLAAI 394
>02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-969698,
969819-971527,971563-972514,972821-973273,974303-974497
Length = 1474
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = +1
Query: 127 LGRIYLDMLNVYKVMSENISQAIALNGVAVTKQPLIKNMRIIKKETLNLISSWVTRSIDN 306
L RI +D + VMS+ + N + +T P++ ++ + ++ + W+T + +
Sbjct: 1107 LTRISIDGFSQPHVMSKPVHD----NSIPITSYPVLPSVNSLSIQSCGIAGGWLTLMLPH 1162
Query: 307 SMVLEN 324
LEN
Sbjct: 1163 LQSLEN 1168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,311,887
Number of Sequences: 37544
Number of extensions: 392153
Number of successful extensions: 1022
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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