Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e15
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.)             332   1e-91
SB_35444| Best HMM Match : Hist_deacetyl (HMM E-Value=1.90577e-43)     30   2.3  
SB_18221| Best HMM Match : HHH (HMM E-Value=0.65)                      29   3.9  
SB_43869| Best HMM Match : ig (HMM E-Value=2.7e-06)                    29   5.2  
SB_17885| Best HMM Match : V-set (HMM E-Value=0.051)                   29   5.2  
SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)           28   9.1  
SB_24522| Best HMM Match : DS (HMM E-Value=0)                          28   9.1  
SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.1  

>SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score =  332 bits (817), Expect = 1e-91
 Identities = 158/238 (66%), Positives = 193/238 (81%)
 Frame = +1

Query: 1    IISQASRNVEILKDPEAVKQLVSILKTNVRACRALAHPYVVQLGRIYLDMLNVYKVMSEN 180
            I+ +A+RN++ L+D E VKQL +ILKTNVR C+++ HP+V QLGRIYLDMLNVY+ +SEN
Sbjct: 347  IVREATRNIDHLRDLEVVKQLGNILKTNVRGCKSIGHPFVTQLGRIYLDMLNVYRCLSEN 406

Query: 181  ISQAIALNGVAVTKQPLIKNMRIIKKETLNLISSWVTRSIDNSMVLENFIPPLLDAVLLD 360
            IS AI+ NG  V KQPLI+ MR +K E L LIS+WV++S D  +V +NFIPPLLDAVL D
Sbjct: 407  ISMAISENGELVMKQPLIRAMRTVKTEVLRLISTWVSKSNDPKLVCDNFIPPLLDAVLGD 466

Query: 361  YQRTAVPEAREPEVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMINKDFEEYPEHRT 540
            YQR  VP AREPEVLS MA  +++LE ++T  VP+IFDAVFECTL MINKDFEE+PEHRT
Sbjct: 467  YQRN-VPGAREPEVLSTMATFINKLEANVTENVPQIFDAVFECTLNMINKDFEEFPEHRT 525

Query: 541  EFFLLLQAVNTNCFKAFLSIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILYRLLLNV 714
             FFLLLQAV  +CF+A L IPP QFKLVLDSI+WAFKHTMRNVADTGL +   +L ++
Sbjct: 526  NFFLLLQAVVQHCFQALLKIPPEQFKLVLDSIVWAFKHTMRNVADTGLTMHATILAHM 583


>SB_35444| Best HMM Match : Hist_deacetyl (HMM E-Value=1.90577e-43)
          Length = 636

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -2

Query: 502 SFPEYIQRLHQIFLVLQKLYVLQVCARLLPCKT----VLQAHELQEQQSFGNPKAQHREE 335
           S PE+  RL  I+  LQ+  V+ +C R+ P K     +L  H  Q    FG    Q R +
Sbjct: 315 SHPEHPGRLQSIWARLQETGVVNMCDRVRPRKATLAEILSVHSEQHTMLFGG-STQCRTK 373

Query: 334 VE 329
            E
Sbjct: 374 AE 375


>SB_18221| Best HMM Match : HHH (HMM E-Value=0.65)
          Length = 324

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +1

Query: 199 LNGVAVTKQPLIKNMRIIKKETLNLISSWVTRSIDNSMVLENFIPPLLDAVLLDYQRTAV 378
           LN V+     L  +  ++K E LN   ++V R +DNS+V+E  +          + R   
Sbjct: 72  LNTVSEVVSVLESSECLLKVECLN---AFVVRKVDNSVVIERIVAQAKTKRSFSFGRIKP 128

Query: 379 PEAREPE 399
            E  +PE
Sbjct: 129 KEQEDPE 135


>SB_43869| Best HMM Match : ig (HMM E-Value=2.7e-06)
          Length = 399

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 31  ILKDPEAVKQLVSILKTNVRACRALAHP-YVVQLGRIYLDMLNVYKVMSENISQ 189
           IL  P+    L++    + +  +   H  Y+V++    L +L+VYK+M  N+ Q
Sbjct: 249 ILTSPQNASTLINETPNHYKVIKQSRHADYIVRIKHDRLRVLHVYKLMLVNVGQ 302


>SB_17885| Best HMM Match : V-set (HMM E-Value=0.051)
          Length = 191

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 31  ILKDPEAVKQLVSILKTNVRACRALAHP-YVVQLGRIYLDMLNVYKVMSENISQ 189
           IL  P+    L++    + +  +   H  Y+V++    L +L+VYK+M  N+ Q
Sbjct: 41  ILTSPQNASTLINETPNHYKVIKQSRHADYIVRIKHDRLRVLHVYKLMLVNVGQ 94


>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2484

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +1

Query: 61   LVSILKTNVRACRALAHPYVVQLGRIYLDMLNVYKVMSENISQAIALNGVAV 216
            L+ +L+ N+     + H YV+Q+  IY+  +N+  V+  N    + +N + V
Sbjct: 1872 LIYVLQVNLIYVLPVNHIYVLQVNHIYVIQVNLSYVLQVNHIYVLQINLIYV 1923


>SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)
          Length = 721

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
 Frame = +1

Query: 280 SWVTRSIDNSMVLENFIPPLLD-AVLLDYQRTAVPEAREPEVL--SCMAAIVHRLEG-HI 447
           S V   + NS + E ++PPLL  A +    +   P+A+  ++L  S    +   +EG  +
Sbjct: 491 STVISDLYNSSLREGYLPPLLKRATVCPLPKQKPPKAKVSDILPISLTCQVAKLMEGLTL 550

Query: 448 TSEVPKIFDAVFECTLEMINKDFEE 522
           +  +P I D +      +  K  E+
Sbjct: 551 SRALPNILDRLDRNQFAVAGKSTEQ 575


>SB_24522| Best HMM Match : DS (HMM E-Value=0)
          Length = 340

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +1

Query: 250 IKKETLNLISSWVTRSIDNSMVLENFIPPLLDAVLLDYQRTAV 378
           ++K+ +N I + +  + DN   LE+FI P+LD +L + Q   +
Sbjct: 158 LRKKGINRIGNLLVPN-DNYCKLEDFIQPVLDKMLEEQQNEGI 199


>SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 493

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/89 (23%), Positives = 38/89 (42%)
 Frame = +1

Query: 256 KETLNLISSWVTRSIDNSMVLENFIPPLLDAVLLDYQRTAVPEAREPEVLSCMAAIVHRL 435
           K T+ +++     + D+   L  +   L+      Y+R  VPE+     L     +VHR 
Sbjct: 394 KSTMTMLAPDTIVTSDDETALAAW-NELVSKAKYQYKRVVVPESFAANCLFINGTVVHRP 452

Query: 436 EGHITSEVPKIFDAVFECTLEMINKDFEE 522
           E  I    P I+  + +  +EM   +F +
Sbjct: 453 EKEIPKSYP-IYKGLKDPKVEMEISEFHK 480


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,263,332
Number of Sequences: 59808
Number of extensions: 495614
Number of successful extensions: 1465
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)