Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e15
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f...   254   5e-68
Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical p...    36   0.023
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr...    35   0.069
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr...    35   0.069
U61949-2|AAB03152.1|  884|Caenorhabditis elegans Puromycin-sensi...    29   3.4  
U61949-1|AAY44009.1|  948|Caenorhabditis elegans Puromycin-sensi...    29   3.4  
AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical p...    29   4.5  
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical ...    29   4.5  
AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine r...    29   4.5  
U21321-10|AAG00048.2|  325|Caenorhabditis elegans T box family p...    28   6.0  
AF100306-10|AAC68926.1|  798|Caenorhabditis elegans Hypothetical...    28   7.9  

>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta family
            protein 4,isoform a protein.
          Length = 1080

 Score =  254 bits (622), Expect = 5e-68
 Identities = 113/240 (47%), Positives = 172/240 (71%)
 Frame = +1

Query: 1    IISQASRNVEILKDPEAVKQLVSILKTNVRACRALAHPYVVQLGRIYLDMLNVYKVMSEN 180
            II+ AS N  +L++PE VK +++ILKTNV AC+++   +V QLG IY D+L++YK++SE 
Sbjct: 678  IIAAASTNDSVLEEPEMVKSVLNILKTNVAACKSIGSSFVTQLGNIYSDLLSLYKILSEK 737

Query: 181  ISQAIALNGVAVTKQPLIKNMRIIKKETLNLISSWVTRSIDNSMVLENFIPPLLDAVLLD 360
            +S+A+   G    K PL+K MR +K+E L L+S++++++ D  ++L++ +PPL DAVL D
Sbjct: 738  VSRAVTTAGEEALKNPLVKTMRAVKREILILLSTFISKNGDAKLILDSIVPPLFDAVLFD 797

Query: 361  YQRTAVPEAREPEVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMINKDFEEYPEHRT 540
            YQ+  VP+AREP+VLS ++ +V +L   +  +VP I  AVF+C+++MINKD E +PEHRT
Sbjct: 798  YQKN-VPQAREPKVLSLLSILVTQLGSLLCPQVPSILSAVFQCSIDMINKDMEAFPEHRT 856

Query: 541  EFFLLLQAVNTNCFKAFLSIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILYRLLLNVEE 720
             FF L+ ++   CF  F+ +PP     V+D+++WAF+HTMRNVA+ GL IL  LL  V E
Sbjct: 857  NFFELVLSLVQECFPVFMEMPPEDLGTVIDAVVWAFQHTMRNVAEIGLDILKELLARVSE 916


>Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical
           protein F28D1.9 protein.
          Length = 684

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 22/81 (27%), Positives = 42/81 (51%)
 Frame = +1

Query: 238 NMRIIKKETLNLISSWVTRSIDNSMVLENFIPPLLDAVLLDYQRTAVPEAREPEVLSCMA 417
           N  + +++ ++ I++  T++I  S+ L+N +   +D  L D +   V    EP+  S   
Sbjct: 192 NSNLKREQLVHCITASKTKAIITSVTLQNIMLDAIDQKLFDVEGIEVYSVGEPKKNSGFK 251

Query: 418 AIVHRLEGHITSEVPKIFDAV 480
            +  +L+  IT+E PK  D V
Sbjct: 252 NLKKKLDAQITTE-PKTLDIV 271


>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
           protein F41H10.3b protein.
          Length = 1005

 Score = 34.7 bits (76), Expect = 0.069
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = +1

Query: 28  EILKDPEAVKQLVSILKTNVRACRALAHPYVVQLGRIYL-DMLNVYKVMSENISQAIALN 204
           E+    +  K L +  +T VRA R L    ++   + YL D+ N+     +++ QA+   
Sbjct: 45  EVCSSKQRSKSLKNTFQTEVRALRGLNFTVLLNPYKNYLNDLTNLSGFTFDDLCQALRFF 104

Query: 205 GVAVTKQPLIKNMRIIKKETLNLISSWVTRSIDN 306
                KQP++K+      E   LI+S +  S DN
Sbjct: 105 AF-YRKQPVLKSNMEDANELFRLIASCIIYSNDN 137


>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
           protein F41H10.3a protein.
          Length = 1140

 Score = 34.7 bits (76), Expect = 0.069
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = +1

Query: 28  EILKDPEAVKQLVSILKTNVRACRALAHPYVVQLGRIYL-DMLNVYKVMSENISQAIALN 204
           E+    +  K L +  +T VRA R L    ++   + YL D+ N+     +++ QA+   
Sbjct: 45  EVCSSKQRSKSLKNTFQTEVRALRGLNFTVLLNPYKNYLNDLTNLSGFTFDDLCQALRFF 104

Query: 205 GVAVTKQPLIKNMRIIKKETLNLISSWVTRSIDN 306
                KQP++K+      E   LI+S +  S DN
Sbjct: 105 AF-YRKQPVLKSNMEDANELFRLIASCIIYSNDN 137


>U61949-2|AAB03152.1|  884|Caenorhabditis elegans
           Puromycin-sensitive aminopeptidaseprotein 1, isoform a
           protein.
          Length = 884

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -1

Query: 728 CGCSSTFNNSRYNICKPVSATFLIVCLNAQIMESKTNLNCAGGMLKNALKQ 576
           C C+   +  R  + +P+  T   + LNA+++ES   +      ++N LKQ
Sbjct: 837 CNCNVLSDTDRQTLARPIGQTVEAIRLNARLLESNRQI------IENLLKQ 881


>U61949-1|AAY44009.1|  948|Caenorhabditis elegans Puromycin-sensitive
            aminopeptidaseprotein 1, isoform b protein.
          Length = 948

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -1

Query: 728  CGCSSTFNNSRYNICKPVSATFLIVCLNAQIMESKTNLNCAGGMLKNALKQ 576
            C C+   +  R  + +P+  T   + LNA+++ES   +      ++N LKQ
Sbjct: 901  CNCNVLSDTDRQTLARPIGQTVEAIRLNARLLESNRQI------IENLLKQ 945


>AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical
           protein C44E4.7 protein.
          Length = 1145

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/69 (30%), Positives = 32/69 (46%)
 Frame = +2

Query: 374 LFLKLVSLKYCLAWQQSCTDLKDI*LLKYQKYLMQSLNVLWK*LTKTLKSIQNIEQNFSY 553
           LF KL+  KY    Q+       + + K  KYL  SLN+  +  T+    I  + + FS 
Sbjct: 614 LFDKLLEQKY----QEGLLQDTKLIIQKTDKYLSSSLNLFNEYNTQEPSKIYPVNEIFSL 669

Query: 554 YCRRSIQTV 580
           +CR   + V
Sbjct: 670 FCRYGSENV 678


>Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.12 protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -3

Query: 504 NHFQSTFKDCIKYFWYFRSYMSFKSVHDCCHARQYFRLTSFRNSSPLV 361
           ++FQ TF +C + +W F   + F S+ +      + RL  ++ SS L+
Sbjct: 158 DNFQCTFNECYQKYWEFHEQVVF-SLIETLSLLLFIRLYIWKRSSHLL 204


>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
           protein T01D3.7 protein.
          Length = 2882

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
 Frame = -3

Query: 672 CHIPHCMFKCPDYGI*NQLELC----WWYAQKCFETVCID 565
           C IP C+  C  +G   Q   C     W  + C  T CID
Sbjct: 822 CSIPRCLTNCTGHGKCIQPNSCECDAGWMGETCSVTSCID 861


>AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical
           protein F56H1.5 protein.
          Length = 1015

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 471 KYFWYFRSYMSFKSVHDCCHARQYFRLT-SFRNSSPLVIQKHSIE 340
           KY++  R  ++F++  D C+   ++  T SF NSS  +++K   E
Sbjct: 703 KYYYSIRFNVTFQNTGDICYIAYHYPYTYSFLNSSLSMLKKRKQE 747


>AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine
           receptor, class j protein44 protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 269 TLFQVGLHARLITVW----FWKTLFHLFSMLCFWITKGLLFLKL 388
           TLF VG H   +  W     W T+  + S++ F++  GL+  KL
Sbjct: 186 TLFSVGSHETTLRAWTAMSIWSTI-SIASIITFFVMAGLVMRKL 228


>U21321-10|AAG00048.2|  325|Caenorhabditis elegans T box family
           protein 35 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 550 LLLQAVNTNCFKAFLSI-PPAQFKLVLDSIIWAFKHTMRNVAD 675
           LL+Q V  +CF  F +  PP + K  L + I   ++  R +AD
Sbjct: 154 LLIQKVFRDCFGCFQAHGPPVEIKFALLTFIATTRYCSRRIAD 196


>AF100306-10|AAC68926.1|  798|Caenorhabditis elegans Hypothetical
           protein T24C4.7 protein.
          Length = 798

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
 Frame = +1

Query: 61  LVSILKTNVRACRALAHPYVVQLGRIYLDMLNVYKV---MSENISQAIALNGVAVTKQPL 231
           +V+ LKT     + L       +GRI   + N Y V    S + S     + +   +   
Sbjct: 302 IVTCLKTRFLWAKPLFECTRTAIGRILNSIFNEYGVPEGFSTSFSPTYIRDTIKSLESVY 361

Query: 232 IKNMRIIKKETL--NLISSWVTRSIDNSMVLENFIPPLLDAVLLDYQRTAVPEARE 393
              +R +  E L  N +  WV     N +   N     L  ++++Y +  +P+  E
Sbjct: 362 AVEIREVWNEPLPYNCLERWVLELAQNELGTRNRWVEQLQFLVMEYNQKPIPDRME 417


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,628,811
Number of Sequences: 27780
Number of extensions: 394952
Number of successful extensions: 1178
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)