Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4e11
(715 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4588| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.100
SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31) 29 3.7
SB_304| Best HMM Match : UPF0154 (HMM E-Value=0.32) 29 4.9
SB_30167| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_9273| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_42560| Best HMM Match : ig (HMM E-Value=2.4e-06) 28 6.5
SB_50760| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_4588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 729
Score = 34.3 bits (75), Expect = 0.100
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Frame = +1
Query: 175 RQNRDRWQNQGECKKDVREPLRS-RRRGAEGCG---SPLRREVPPGQHHIAVQEERHLDR 342
R+ R+ + Q E +++ P RS RRR +G G S RREV + +EE +R
Sbjct: 93 RREREARRKQREQEEEEPAPARSSRRRDQDGSGYISSRRRREVEKEEEERQREEEEEEER 152
Query: 343 KRKLRHQLQHVCSWHDISDSLRNQGHGRHHDILPGEVSFELPPEDTT 483
+R R + Q D + S R +G + P + + E E+ T
Sbjct: 153 ERARRRKDQ-----EDNAPSRRRRGKEEEEEATPPQDNEEAEEEEET 194
>SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1020
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +2
Query: 512 ADVERISHCYFNFANKTVSG-DEAGAPGAFAPQSPRPPLVVGDVKRCPRAKKTATGSPKN 688
+DV ++H + N +S +A G + + P P + +RCP + + T + N
Sbjct: 487 SDVLTLNHSLITWNNTPISRCSQACRAGFYILRKPSDPPCCWECRRCPFGRVSDTSNATN 546
Query: 689 CSSNESS 709
C SS
Sbjct: 547 CEDCPSS 553
>SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/80 (26%), Positives = 36/80 (45%)
Frame = -1
Query: 649 TSFHVTDHQWRSRGLGGEGARCSGLITAHRFVREIKITMRDPLHVRPGHNVFGHVEWYLR 470
TS T H+ ++R L LIT F + + PL +R GH V + Y+
Sbjct: 656 TSLPPTYHETKARSLSVGQEHSVNLITKKHFTLQQRNEPTSPLQLRYGHRVSQQISTYI- 714
Query: 469 EEVRMKLPLAVYRDDVRVLD 410
+++ + +DV+V+D
Sbjct: 715 --LKILAEEVLGYEDVQVVD 732
>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3051
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 483 STWPNTLWPGRTWRGSRIVIL 545
S WP +LWP WR S ++L
Sbjct: 1659 SLWPRSLWPRSLWRWSLCLVL 1679
>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
Length = 662
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 229 EPLRSRRRGAEGCGSPLRREVPPGQHHIAVQEERHLDRKRKL 354
EP +S E PLR +PP +H A ++E R RK+
Sbjct: 603 EPPQSTSSDVEMKDEPLREPLPPAKHTKAHRKEEKAARDRKM 644
>SB_304| Best HMM Match : UPF0154 (HMM E-Value=0.32)
Length = 701
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 152 IPGLLKVGDKIEIGGKIKEN-ARKMSVNLCAQEGEEPRDV 268
+PG LKVG + I G+ + NL A G +PR V
Sbjct: 379 VPGSLKVGFNLSISGQANNTVVNNVGRNLGALRGRQPRPV 418
>SB_30167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 352 LRHQLQHVCSWHDISDSLRNQGHGRHHDILPGEVSFELPPED 477
LRH +++ HDI+D L++ HGR I E +LP +
Sbjct: 39 LRHMGENIPE-HDINDILKDASHGRKRKITFEETIDKLPESE 79
>SB_9273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +1
Query: 232 PLRSRRRGAEGCGSPLRREVPPGQHHIAVQEERHLDRKRKLRHQL--QHVCSWHDISDSL 405
P + GAE +RRE+ P +++ E K R L Q W ++ D
Sbjct: 86 PYSVSKYGAEAFSDAIRRELAPFGISVSIVEPGFFRTKMPTRENLTQQWETLWENLDDDK 145
Query: 406 RNQGHGRHH 432
R++ +G H+
Sbjct: 146 RDE-YGEHY 153
>SB_42560| Best HMM Match : ig (HMM E-Value=2.4e-06)
Length = 360
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 130 NAGFHRQHTGITKSWRQNRDRWQ-NQGECKKDVREPLRSRRRGAEGCGSPLRRE 288
N G H +H G N+ + NQGE K +P + + + + CG P + E
Sbjct: 190 NQGEHNKHCGKPNQGEHNKHCGKPNQGEHNKHCGKPNQDQGQHNKHCGKPNQGE 243
>SB_50760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 278 FDVRFHRDNIISLSRKNGIWIGSGNYDTN 364
FD R+H+DN I LS+ W+ + YD N
Sbjct: 91 FDNRYHKDN-IPLSKNARDWVQTFCYDKN 118
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,874,118
Number of Sequences: 59808
Number of extensions: 584512
Number of successful extensions: 1707
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1706
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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