Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e10
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    27   2.2  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    26   5.1  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    26   6.8  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    26   6.8  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   9.0  

>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 122 VFIFCATLNSQPVLATISSTLTPSANSVNIRPF 24
           V++ C+ L   P +A  SST + S   V  RPF
Sbjct: 693 VYLTCSMLMEIPAMAAASSTASDSRKRVISRPF 725


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 562 TQILTRWSLISVIRYILKQT 621
           T  L RW+L+++ R+I K+T
Sbjct: 613 TDALQRWNLVNIWRHIFKET 632


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
 Frame = +3

Query: 438 KKYIL*QETKNFLMRDLQKL*QGIR------AICTY*IMYTILILFHHSDFNKM 581
           +K IL  E K    +DLQKL   I        +C   I Y   I  H SDF ++
Sbjct: 404 QKAILNDEQKELYRKDLQKLGISILFVFFIILVCLAVIFYVFNIRIHWSDFKEL 457


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 348 LRTSLIFTAFFAFTRYKINKNDMICLQTLFKKYIL*QETKNFLMRD 485
           L+ +L    ++ +  Y+I ++ +  LQ L KKY       NF + D
Sbjct: 252 LKKALKQAEYYCYMNYRIKEDRLKVLQQLLKKYEGRHNFHNFTVTD 297


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 272 NDIYCKISHRYWNLMICWGLNGYLRFKDVL 361
           +DIY    +  W  ++C G N +L   +VL
Sbjct: 583 SDIYVVTENHRWLHIVCEGFNCFLELPEVL 612


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,778
Number of Sequences: 5004
Number of extensions: 60956
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)