Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e10
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0135 + 1042889-1044255,1045368-1045809                           29   4.1  
11_01_0133 + 1121392-1122731,1123417-1123858                           29   4.1  
07_03_1211 - 24908295-24908534,24908928-24909005,24909542-249097...    28   9.4  

>12_01_0135 + 1042889-1044255,1045368-1045809
          Length = 602

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 22  EKGLILTELAEGVKVEDIVASTGCEFNVAQKIKTMGDVTRP 144
           E G   T   +G+ + DI+AS+G   +VAQ I  + ++ RP
Sbjct: 74  EGGPPSTAWVDGI-IRDIIASSGAAVSVAQLIHNVREIIRP 113


>11_01_0133 + 1121392-1122731,1123417-1123858
          Length = 593

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 22  EKGLILTELAEGVKVEDIVASTGCEFNVAQKIKTMGDVTRP 144
           E G   T   +G+ + DI+AS+G   +VAQ I  + ++ RP
Sbjct: 72  EGGPPSTAWVDGI-IRDIIASSGAAVSVAQLIHNVREIIRP 111


>07_03_1211 -
           24908295-24908534,24908928-24909005,24909542-24909748,
           24909849-24910038,24910195-24910532
          Length = 350

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -2

Query: 757 YVFTCDKQILQAHFTGKVQSISTETLQYLNLGFTNNSILNRLRKYLFVLICT 602
           Y++ CD Q       G  +S+     +     FTN+SIL    K L  L CT
Sbjct: 223 YLYNCDIQGSIDFIFGNARSLYQSCHKLTIQAFTNSSILYLTAKELLTLGCT 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,743,940
Number of Sequences: 37544
Number of extensions: 293508
Number of successful extensions: 530
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)