Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e10
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32524| Best HMM Match : CoA_trans (HMM E-Value=1.26117e-44)         46   3e-05
SB_11259| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                32   0.58 
SB_12596| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)                   30   2.3  
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)                    29   4.1  
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        28   9.5  

>SB_32524| Best HMM Match : CoA_trans (HMM E-Value=1.26117e-44)
          Length = 318

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 19/33 (57%), Positives = 25/33 (75%)
 Frame = +1

Query: 1   CVFEVDKEKGLILTELAEGVKVEDIVASTGCEF 99
           CVF+VD E+GL LTEL  GV ++++  STGC F
Sbjct: 231 CVFDVDPEEGLTLTELWPGVSIQEVQTSTGCGF 263


>SB_11259| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 772

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -1

Query: 206 FLITFHICYLL*LHFYSVIVSGLVTSPIVFIFCATLNSQPVLATISSTL 60
           FLI   +CY+  LH   V ++ +VT  I+FI    +N+  ++   ++T+
Sbjct: 368 FLIVAALCYIYCLHLIIVTITIIVTITIIFIAIIFMNAICIVTFATTTI 416


>SB_12596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/73 (23%), Positives = 36/73 (49%)
 Frame = -1

Query: 221 IQLKIFLITFHICYLL*LHFYSVIVSGLVTSPIVFIFCATLNSQPVLATISSTLTPSANS 42
           I +   +I  H C+    H+Y+ I++ ++   I+ I   T+N   + A IS  +      
Sbjct: 129 INVITIMINHHHCH----HYYTAIITIIIIVIIMIIIIITINVISITAIISFVIIIIITI 184

Query: 41  VNIRPFSLSTSKT 3
           +N+   ++S+S +
Sbjct: 185 INVIKITMSSSSS 197


>SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)
          Length = 1277

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = -3

Query: 258  LMIR*NNKIKNGYTIKNIFDNVSYLLFVVITFLFCDCFGSGDVTHRFYFLCY 103
            LM R NN   +G  +   F N+  L+ V+   +F     +GD+TH FYF CY
Sbjct: 1019 LMDRMNNNFPHGGAMDLHFSNMRSLIQVLDPEMFEHLQQNGDLTH-FYF-CY 1068


>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
          Length = 1860

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -1

Query: 167  HFYSVIVSGLVTSPIVFIFCATLNSQPVLATISSTLTPSANSVNI 33
            H Y +I+  +VT  I+F +  T +  P L   SST TPS  ++ I
Sbjct: 1243 HHYVIIIITIVTVIIIFTYIITSDHTPPL---SSTWTPSGWNLTI 1284


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 284 CKISHRYWNLMICWGLNGYLRF 349
           C I   YW   + W +NGYL F
Sbjct: 727 CDIWRGYWAQRLLWEVNGYLSF 748


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,941,825
Number of Sequences: 59808
Number of extensions: 393457
Number of successful extensions: 830
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)